Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05232 ATGGAAAGGTACGAGGTTGTTAAGGATTTAGGAGCTGGGAATTTTGGAGTGGCTAGGCTTCTAAGGAACAAGGAGACTAAGGAACTTGTTGCTATGAAATACATCGAGCGTGGCCACAAGATTGATGAGAATGTGGCAAGAGAGATTATCAACCACAGGTCCCTTCGGCACCCGAATATAATTCGCTTCAAAGAGGTGGTTTTGACCCCTACTCATTTAGCAATAGTAATGGAGTATGCGGCTGGAGGAGAACTCTTCGAGAGGATCTGTAATGCTGGCCGGTTTAGTGAAGACGAGGCTAGATATTTCTTTCAGCAGCTGATATCTGGTGTCCATTACTGTCATGCTATGCAAATATGTCATAGAGATTTGAAGCTGGAAAACACACTTTTAGATGGAAGCCCTGCACCTCGCTTGAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTTCATTCCCGACCCAAATCAACTGTTGGAACTCCGGCTTATATAGCACCAGAGGTTCTTTCTAGGAGGGAATATGACGGCAAGTTGGCTGATGTATGGTCCTGTGGAGTGACCCTTTATGTTATGCTGGTTGGAGCATATCCCTTTGAGGATCAGGATGACCCTAGAAATTTTAGGAAAACAATTCAGCGCATAATGGCTGTTCAGTACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAAAGACCTCCTATCTCGTATATTTGTTGCAAATCCATTAAGGAGAATTTCTCTCAAGGAAATCAAGAACCATCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTGCATATTACCAAAGAGGCAACCCAAGCTTTTCTATTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAGAACCTCCTCCGGTATCTAGGCCTGTCAAAGGCTTCGGCTGGGAAGGTGAAGAAGAAGAGGAAGACGTGGAAGAAGAGGTGGAGGAAGAGGAGGATGAAGAAGATGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTTCAGATCAGTTAA 1062 0.4341 MERYEVVKDLGAGNFGVARLLRNKETKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCKDLLSRIFVANPLRRISLKEIKNHPWFLKNLPRELTESAQAAYYQRGNPSFSIQSVDEIMKIVGEAREPPPVSRPVKGFGWEGEEEEEDVEEEVEEEEDEEDEYDKRVKEVHASGEFQIS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05232 353 Coils Coil 316 347 - -
Trre8g05232 353 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Trre8g05232 353 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05232 353 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre8g05232 353 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trre8g05232 353 SUPERFAMILY Protein kinase-like (PK-like) 2 291 IPR011009 -
Trre8g05232 353 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05232 353 MobiDBLite consensus disorder prediction 315 337 - -
Trre8g05232 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Trre8g05232 353 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05232 353 CDD STKc_SnRK2 3 259 - -
Trre8g05232 353 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Trre8g05232 353 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Trre8g05232 353 PANTHER SERINE/THREONINE KINASE 2 310 - -
Trre8g05232 353 MobiDBLite consensus disorder prediction 302 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05232 Trre-Chr8 54540766 54543144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05232 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 42.279 9.37e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre8g05232 Pkinase 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05232 K14498 - gmx:547968 655.595