Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05227 ATGGCATCTGCAATAGTTCGTAGGAACATCACCAACAACTTGAAAAGGTTGCCATCATTGTCTTGTTGGGTTTTCAACAATAATAATCATAATCATTTGTTGAAGAATGTTGAACATGGTGGTAGTGGTACCGTTTCCTTTCACGCAGAAGCAGCTGGTGTTGGATTACCATCTTACATGCGTGGAGCTGTTTATTGGGAACCCAACAAACCTCTCACCATTGAAGAATTTCACATTCCTCGCCCCAAAGCTGGTGAACTTCTCATCAAAACCAAAGGATGTGGAGTATGCCACTCTGATCTTCATGTCATGAAAGGTGAAATTCCATTTTCTAGTCCTTGTGTTGTGGGGCATGAGATTACTGGTGAAGTTGTTGAACATGGACAACACACCGATGCCAAAACCATCGAAAGGCTTCCGGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCAATTATTGTTCAAAGGGCCATGACGATCTGTGCGAAGCCTTTTTTGCTTATAATCGAGCACAGGGAACCCTCTATGATGGTGAAACTCGACTATTTCTTCGAAGCAGTGGAAAACCGGTATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCGGCAAATGCATTGGCTGTATTACCAAACTCAATGCCATATACCGAGTCTGCAATTTTAGGATGTGCTGTTTTTACTGCTTATGGTGCTATGGCTCATGCGGCTGAAGTTCGCCCGGGTGATACTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCATTTGGTGCCTCGGATATAATTGCTGTCGATATTCAGGATGATAAGCTACAGAAAGCAAAGACACTTGGTGCAACTCACACAATAAATTCGGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGACGTTGCGGTGGAAGCCTTGGGGAGACCACAGACATTTGCTCAGTGCACACAAAGTGTGAAAGATGGAGGAAGAGCCGTGATGATTGGACTAGCAAAAGCCGGTTCTTTAGGAGAGGTGGATATAAATAGACTTGTTCGCAGAAAGATAAAAGTTATTGGTTCATATGGAGGCAGGGCTAGGCAAGATCTTCCAAAGTTAATTAGATTGGCAGAAACAGGTATCTTTGACCTTGGCCGTGCTGTTTCAAGAAAATACACTTTCGAGGAGTCTGGCAAAGCATTCCAGGATCTCAACGAAGGAAAAATCATCGGTCGAGCTGTAATCGAGATAGTATAG 1296 0.4383 MASAIVRRNITNNLKRLPSLSCWVFNNNNHNHLLKNVEHGGSGTVSFHAEAAGVGLPSYMRGAVYWEPNKPLTIEEFHIPRPKAGELLIKTKGCGVCHSDLHVMKGEIPFSSPCVVGHEITGEVVEHGQHTDAKTIERLPVGSRVVGAFIMPCGNCNYCSKGHDDLCEAFFAYNRAQGTLYDGETRLFLRSSGKPVFMYSMGGLAEYCVVPANALAVLPNSMPYTESAILGCAVFTAYGAMAHAAEVRPGDTVAVIGTGGVGSSCLQIARAFGASDIIAVDIQDDKLQKAKTLGATHTINSAKEDPIEKILEITGGKGVDVAVEALGRPQTFAQCTQSVKDGGRAVMIGLAKAGSLGEVDINRLVRRKIKVIGSYGGRARQDLPKLIRLAETGIFDLGRAVSRKYTFEESGKAFQDLNEGKIIGRAVIEIV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05227 431 Gene3D - 237 374 - -
Trre8g05227 431 SMART PKS_ER_names_mod 67 428 IPR020843 GO:0016491
Trre8g05227 431 Gene3D - 64 420 - -
Trre8g05227 431 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 222 395 IPR036291 -
Trre8g05227 431 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 59 428 - -
Trre8g05227 431 Pfam Alcohol dehydrogenase GroES-like domain 85 215 IPR013154 -
Trre8g05227 431 Pfam Zinc-binding dehydrogenase 260 391 IPR013149 -
Trre8g05227 431 FunFam Alcohol dehydrogenase (Zinc) 64 253 - -
Trre8g05227 431 SUPERFAMILY GroES-like 55 263 IPR011032 -
Trre8g05227 431 CDD Zn_ADH10 60 429 - -
Trre8g05227 431 FunFam Sorbitol dehydrogenase 237 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05227 Trre-Chr8 54517204 54520350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05227 74 349 Monolignol Biosynthesis Gene Families AT4G37970 27.046 1.48e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05227 - - gmx:100775182 718.768