Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05226 ATGCCTCTTTTAAGGAGGAAGCCTTTTGCCTTGACTGAGCCTCCTCAGGATTTGAAGCCAGACGAGCATGTTTACCAAGTTCGATTTACTAAAGAAATATTTCGAGATTATCAAGATTACTTGAACCGTTTGAATCTATACCGTCAAAGGGTTTGGGCATGTAAGGCCACTGGAAAAACTGGTTTGACTTATGAAGAGGCTCTGGTATCAGAACAACGAGCTACTGAGAAATTCCTACAGTTTCCTAAAGAATTTACGACTCCTGCTTTAAGGATCATTCAGTACAGTATGCTCCCTTTGAAGGAGCTCGCAGATTCTATTGCTGAGAAATTGCAGCAGCGTTTGTATGCTGGTGCCGAGTTATACGGGAAAAAAGATGATGGTGTATGTCCGTGCAAAATATTAAAAGTCATCCAGGAAGGAGTCGACAAATACCGTTATGAGGTAGCTTGGCTTGATAAAAACAAGAATATAAGTGAAAAAACAGAAGTCAATGCAGAAGATTTGGTGTTAAAGAAGCCGCTTTTTAGTAGAAATATTCTGAAGTCTTTTATCCGAGAATCTACATATCGAAATGCCCCTTGGGTTTTACATGACAAACTGGCACAAAAGCACGGTATCTCAACCGATGTTCCTGTGGAGTTAAGGGGAAAGGTTTTTCTCAAAAACGGACTTATAGTTTGCTCCAAGAAAAGGAACAATGAGGAATCAATGGAAGAAGCTGATAAACACAAAAAGAAGAAGTTGGACGGGACACTAGTCAATGGTTCTTCTCAAGGAACAGCAGAAAATGGAGAATACAAGGATATACCGGTCAAATATCCCATTGATGATCTGTTGGTGAAGCCTAGTCCAGACGACCCTGTGTTCACTGATCGCCCTTCTCCATCAAGAGACTTCAATGTTCCAATGCACTGTATAGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGTAAACAGTTAAACTTGTGGCCCTACTCTTTGGAAGATTTTGAAAATGCAATCTGCAATAAGGATAGCAATGTGCTCCTTGTGGAATCTCATGCTGCACTTTTTCGAGTTCTTATCGATGATGGTGGCGAATACACTTCAGCTATAGAGAATCGAAAGTTGCAGAAGATTACAATGGTTACTTGGAGCAAATATTTATGCGATTTTCTGGAAATGATCAATATTCCTCAATTACGGCACTATGGAGCAACCATAAGACGGGGACATTATGGCCTTGTAGATGCCAATGCTAAATTAGAAATCTTACGTGAGTTGGTCAATCAAGTTCTTGAAACTGCAATTTTCAGGGAAAAGTTGGATGTGTTGATTGAACAGCGGCAGGAACTTGGGGCTGCTAAACGAGAAGAAGCAATTGAAGATGGCCGAAAACGCAGAGAAAAAAAAGAGAGGTTAAAAGCTCTCTCAGAAAGTAATGGCCATCAAATCAACAATTCAAATATCCCAGCAAACAATGACCACTCCATAGTAAATGGACATGTGGAAGATAAAATAAATGTAGAGATAGAGTCAAGGCAAGACAATTCACAAGGAGGAAGCGGGATTAAGCATTCAAGTCATGCTTCAAAAAAGACTCTTAAAAACCTGGATTCAGAGATGAGAGAACCAGCTGAAAATGGAAAAGAATTATCCCATAAGGAATCAAAGAAACGGATAAAGCAGAGGAGAGAATACTTTGAACGGGAGATAGAGAAACGAATTGTTAGCAGAAGCCCATTAGGTAAAGACCGAGATTACAATAGGTATTGGTGGTTCCGTCGTGATGGAAGGATATTTGTTGAAAGCGGCGACTCCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATGGGATCGCTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGAAAAACCACCTGGAAAAAAATTATAGTAGTATATGCTCAGAACTGCAGAAGAGATCAAAGGATTTGATGCAGAAAATTGCGAATGACGAGTCTGCGCTTCGAAGGTCTACTCGTGTTCGAGCTGCACCGAGGGAAAATCCCGCCAATGCTTTCCTCAAATATGTTAACAAGTGGAAAGAAGAATAG 2085 0.4077 MPLLRRKPFALTEPPQDLKPDEHVYQVRFTKEIFRDYQDYLNRLNLYRQRVWACKATGKTGLTYEEALVSEQRATEKFLQFPKEFTTPALRIIQYSMLPLKELADSIAEKLQQRLYAGAELYGKKDDGVCPCKILKVIQEGVDKYRYEVAWLDKNKNISEKTEVNAEDLVLKKPLFSRNILKSFIRESTYRNAPWVLHDKLAQKHGISTDVPVELRGKVFLKNGLIVCSKKRNNEESMEEADKHKKKKLDGTLVNGSSQGTAENGEYKDIPVKYPIDDLLVKPSPDDPVFTDRPSPSRDFNVPMHCIGDLLMVWDFCTSFGKQLNLWPYSLEDFENAICNKDSNVLLVESHAALFRVLIDDGGEYTSAIENRKLQKITMVTWSKYLCDFLEMINIPQLRHYGATIRRGHYGLVDANAKLEILRELVNQVLETAIFREKLDVLIEQRQELGAAKREEAIEDGRKRREKKERLKALSESNGHQINNSNIPANNDHSIVNGHVEDKINVEIESRQDNSQGGSGIKHSSHASKKTLKNLDSEMREPAENGKELSHKESKKRIKQRREYFEREIEKRIVSRSPLGKDRDYNRYWWFRRDGRIFVESGDSKEWGYYSSKEELDALMGSLNCKGERERALKNHLEKNYSSICSELQKRSKDLMQKIANDESALRRSTRVRAAPRENPANAFLKYVNKWKEE 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05226 694 MobiDBLite consensus disorder prediction 236 251 - -
Trre8g05226 694 MobiDBLite consensus disorder prediction 476 493 - -
Trre8g05226 694 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Trre8g05226 694 MobiDBLite consensus disorder prediction 511 525 - -
Trre8g05226 694 Coils Coil 645 665 - -
Trre8g05226 694 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 692 - -
Trre8g05226 694 MobiDBLite consensus disorder prediction 529 559 - -
Trre8g05226 694 ProSiteProfiles DDT domain profile. 304 364 IPR018501 -
Trre8g05226 694 MobiDBLite consensus disorder prediction 511 559 - -
Trre8g05226 694 Pfam DDT domain 305 361 IPR018501 -
Trre8g05226 694 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 576 640 IPR028941 -
Trre8g05226 694 SMART testlast3 304 364 IPR018501 -
Trre8g05226 694 MobiDBLite consensus disorder prediction 454 475 - -
Trre8g05226 694 MobiDBLite consensus disorder prediction 236 265 - -
Trre8g05226 694 MobiDBLite consensus disorder prediction 454 495 - -
Trre8g05226 694 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Trre8g05226 694 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05226 Trre-Chr8 54509819 54516152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05226 297 441 PHD Transcription Factor Family AT5G35210 26.282 1.26e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre8g05226 WAC_Acf1_DNA_bd 3.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05226 - - gmx:100789956 975.696