Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05213 ATGGCTGCTACTAATAGCTCTTTGCCATCAGCATATGCAACAAGTGCTGCAGTACCAGATTGGTTAAACAAAGGAGACAACACATGGCAAATGGTAGCAGCAACCCTTGTTGGAATCCAAAGCATGCCGGGACTAGTTATCCTATACGGCAGCATAGTGAAAAAGAAATGGGCTGTAAACTCAGCTTTCATGGCTCTCTATGCTTTTGCAGCAGTTATAATCTGTTGGGTTACATGGGCTTATAAGATGTCATTTGGTGAAAAACTTTTACCCTTTTGGGGTAAAGCCGGTCCTGCTTTAGGCCAGAAATTTCTAATCAACCAGGCCGCGCTACCGGCCACAATCCATCACTATAATAATGGACAAGTAGAAACTGCTGAGATTGAACCGTTTTATCCAATGGCTACTATGGTTTGGTTTCAGTGTGTTTTTGCTGCAATTGCATTAGTTATATTGGCTGGTTCTGTTTTGGCTAGAATGAGTTTTAAGGCATGGATGATGTTTGTGCCACTTTGGTTAACTTTTTCTTATACTGTTGGTGCTTTTAGTGTGTGGGGTGGTGGATTCTTGTTTCAATGGGGTGTTATGGATTATTCTGGTGGTTATGTTATTCATCTTTCTTCTGGGATTGCTGGTTTCACTGCTGCTTATTGGGTTGGGCCTAGATCAAAGAAGGACAGAGAAAGATTCCCACCAAACAATGTGTTACTAACGTTGGCAGGGGCAGGTTTACTATGGTTGGGATGGGCAGGTTTCAACGGTGGAGATCCTTATTCAGCCAACACTGATTCTTCCATGGCTGTTCTCAACACAAACATTTGTGCTGCCACAAGTCTCCTAGTATGGACATGGCTTGATGTCATATTCTTTAAGAAACCATCAGTTATTGGAGCTGTTCAGGGCATGATCACTGGCCTTGTTTGCATCACTCCCGGCGCCGGTCTTGTTCAAGGATGGGCTGCCATAATTATGGGCATACTATCAGGAAGTGTACCATGGTACACAATGATGGTACTTGGAAAAAAGTTTACAATATTTCAAAAGGTTGACGACACCCTGGCCGTGTTCCACACTCACGCCGTGGCTGGTCTTCTAGGTGGTGTACTAACTGGTTTATTTGCCGAGCCAACTCTAAGTACTCTCTTTCTCCCCGTCACTAATTCCAAAGGAGGTGTCTATGGAGGCCCCGGCGGAGTTCAAATCCTCAAACAAATAGTTGGAGCATTATTCATCATTGGATGGAACATTGTTGCCACTTCAATTATTTGTTTAGTTGTAGGTTTGATTGTTCCTTTGAGAATGACTGAGGAAGAATTGCTTATTGGAGATGATGCGGTTCATGGGGAAGAAGCTTATGCTTTGTGGGGTGATGGTGAGAAACTTAGCCTCTACAAAGATGATACTACAAGTCATGGAGTTTTGGCATCAAGTGGTGCTACTCAAGTTGTCTAG 1452 0.4339 MAATNSSLPSAYATSAAVPDWLNKGDNTWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLINQAALPATIHHYNNGQVETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMSFKAWMMFVPLWLTFSYTVGAFSVWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIIMGILSGSVPWYTMMVLGKKFTIFQKVDDTLAVFHTHAVAGLLGGVLTGLFAEPTLSTLFLPVTNSKGGVYGGPGGVQILKQIVGALFIIGWNIVATSIICLVVGLIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSLYKDDTTSHGVLASSGATQVV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05213 483 SUPERFAMILY Ammonium transporter 21 434 - -
Trre8g05213 483 NCBIfam ammonium transporter 26 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre8g05213 483 ProSitePatterns Ammonium transporters signature. 197 222 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre8g05213 483 FunFam Ammonium transporter 10 455 - -
Trre8g05213 483 Pfam Ammonium Transporter Family 29 452 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre8g05213 483 Gene3D Ammonium transporter AmtB like domains 2 455 IPR029020 -
Trre8g05213 483 PANTHER AMMONIUM TRANSPORTER MEP2 12 461 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05213 Trre-Chr8 54424112 54427540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05213 134 471 Inorganic Solute Cotransporters AT2G38290 70.710 1.07e-168 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05213 K03320 - gmx:100785993 856.67