Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05212 ATGTTGCTCCCAAATTCTAGGAGGTTTCCTCTGAAAATATTGATGAGGTGGTTCATATTCTTTGTTGTCTTGAAACTCAGTTTTGCAATCCAAGATCCTGACATAGAAGGTGAAGCTCTGCTTGATCTTTTGAATTACCTCAATGATTCCAATAATCAAATAAATGATTGGGATAGTCATTTAGTGAGCCCTTGTTTCAGTTGGTCACATGTAACTTGTAAAAATGGACATGTCATATCTCTGACCCTGGCTTCCATTGGATTTTCTGGAACACTTTCACCCTCAATTATCAAATTGAAATATTTGGTTAACTTGGAATTGCAGAACAACAACATTTCTGGCCCTTTACCTGATTACATTGCCAATTTGACATACCTACAATATCTAAATCTCGCCAACAATAATTTTAATGGTTCTATACCACTTATATGGGGTCAACTATCCAGTCTCAAGAATCTGGATCTGTCATCTAATGGTCTTACTGGAACTATCCCAACACAACTCTTTTCAGTTCCAATGTTTAACTTTTCAGATACGCGCCTTGGTTGCGGCTCTAGCTTCAACCAGCCTTGTGTTTCTAAATCTGATCATCCAGTTTCAACCAAAAAATCAAAAGTGGCAAAAGCCGTGCGTTATGCGAGTTATGGTGCATTCGCACTTCTGATTCTTGGGGCCATCTTTACATATAGACACTATCAAAAGCAAAGACACAAAAGTGATGTCTTTGTTGATGTTTTAGGTGAAGATGAGAGCAAAATTTCTTTTGGGCAACTACGAAAGTTTTCTTTGCGTGAACTCCAACTTGCAACTAAAAATTTCAGTGAAAGCAATGTAATTGGCCAAGGTGGTTTTGGAAAAGTGTACAGAGGACTACTCTCAGATAACACAAAAGTTGCTGTGAAACGCCTCACCGATTATCATAATCCTGGTGGTGAGGCTGCGTTCGAGAGAGAAGTTCATCTCATTAGTGTCGCGGTTCATAGAAACCTCCTAAGACTAATTGGATTCTGCACAACCTCAACTGAAAGAATCCTTGTATATCCTTTCATGGAAAATCTAAGCGTGGCATATCGATTAAGAGATTTGAAATCTGATGACAAAGGCTTGGATTGGCCAACAAGGAAGCGTGTAGCTTTCGGTACAGCACACGGTTTGGAATATCTACACGAGCAATGCAATCCAAAGATAATTCACCGTGATCTAAAGGCTGCGAATATCCTTTTAGATGACGAGTTTGAACCTGTTCTAGGTGATTTTGGACTAGCCAAGCTGGTCGATGTAAGGATGAGTCATGTTACTACTCAAGTGCGCGGTACAATGGGTCACATTGCCCCGGAATATTTGTCAACTGGAAAATCATCAGAGAAAACAGATGTTTTTGGATATGGCATAACACTTCTAGAACTTATCACAGGTCAGCGCGCAATTGACCTCTCTCGGCTTGAAGAGGAGGAGGATGTTCTTCTGATTGATCATGTAAAAAATCTACTAAGAGAAAATAGGGTGGAGGACATAGTAGACAACAATTTGGAGACTTTTGATCCCAAAGAAGTTGAAACCATTCTTCAAGTTGCATTACTTTGTACACAAGCCTATCCAGAGGATCGTCCGACAATGTCAGAAGTGGTAAAAATGTTGCTGGGAGTCGGATTAGCGGATAGATGGGCCGACTGGAAGCAACTTGAAGAAACTAGAAATGAAGAAATAGAATTATCACTCATGACTCACCAATTTCCTTGGAGTGATGAATCTACTCTTGATCAAGAAGCTATACAACTTTCAAGAGCAAGATAG 1794 0.3974 MLLPNSRRFPLKILMRWFIFFVVLKLSFAIQDPDIEGEALLDLLNYLNDSNNQINDWDSHLVSPCFSWSHVTCKNGHVISLTLASIGFSGTLSPSIIKLKYLVNLELQNNNISGPLPDYIANLTYLQYLNLANNNFNGSIPLIWGQLSSLKNLDLSSNGLTGTIPTQLFSVPMFNFSDTRLGCGSSFNQPCVSKSDHPVSTKKSKVAKAVRYASYGAFALLILGAIFTYRHYQKQRHKSDVFVDVLGEDESKISFGQLRKFSLRELQLATKNFSESNVIGQGGFGKVYRGLLSDNTKVAVKRLTDYHNPGGEAAFEREVHLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKSDDKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEPVLGDFGLAKLVDVRMSHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELITGQRAIDLSRLEEEEDVLLIDHVKNLLRENRVEDIVDNNLETFDPKEVETILQVALLCTQAYPEDRPTMSEVVKMLLGVGLADRWADWKQLEETRNEEIELSLMTHQFPWSDESTLDQEAIQLSRAR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05212 597 FunFam Leucine-rich repeat receptor-like kinase 36 144 - -
Trre8g05212 597 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 556 - -
Trre8g05212 597 SUPERFAMILY Protein kinase-like (PK-like) 252 546 IPR011009 -
Trre8g05212 597 ProSiteProfiles Protein kinase domain profile. 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05212 597 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Trre8g05212 597 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05212 597 SUPERFAMILY L domain-like 37 172 - -
Trre8g05212 597 FunFam Somatic embryogenesis receptor-like kinase 1 350 566 - -
Trre8g05212 597 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Trre8g05212 597 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05212 597 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Trre8g05212 597 Gene3D Transferase(Phosphotransferase) domain 1 350 565 - -
Trre8g05212 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Trre8g05212 597 Gene3D Ribonuclease Inhibitor 33 196 IPR032675 -
Trre8g05212 597 FunFam Somatic embryogenesis receptor kinase 1 242 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05212 Trre-Chr8 54415675 54419149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05212 7 597 Receptor kinase-like Gene Family AT5G10290 54.369 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre8g05212 Pkinase 6.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05212 - - gmx:100800886 995.727