Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05208 ATGTTGAAGTCCTTAACATTACTTAGTATCATGTTGGTGATTGTTGCAATTACAATCCCTACACAAGGTCAAAAAGTTGATTGGAGTCCTACAAAAACAACTGTGCGTGTTTCAAATGATATGGGCACCAATGTTAATATGCATTGTAAATCATCAGATGATGATCTTGGCAGCCATGTTCTTGCCCAAGGTCAATATACAGAATGGTCTTTTCGTGCCAACATTCGCGGTACGACTCTATATTCTTGCGTCTTCAATTGGGATGGCGTGACAAAGAACGTTGTAATTTATGATGCTACGAAGGATGAAGATGTATGTATTACCAAATGTTGGCGAGTTCTTAGAACCGATGGAGCCTATTTTTATAATCAATACAAAAGCTCTTGGGATAAAAGATATGAATGGTAA 408 0.375 MLKSLTLLSIMLVIVAITIPTQGQKVDWSPTKTTVRVSNDMGTNVNMHCKSSDDDLGSHVLAQGQYTEWSFRANIRGTTLYSCVFNWDGVTKNVVIYDATKDEDVCITKCWRVLRTDGAYFYNQYKSSWDKRYEW 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05208 135 Pfam Plant self-incompatibility protein S1 34 135 IPR010264 -
Trre8g05208 135 PANTHER - 31 129 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05208 Trre-Chr8 54365089 54365496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05208 13 135 Carbohydrate Esterase AT3G16970 31.618 1.83e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05208 - - mtr:25501956 229.95