Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05198 ATGGGCAAGGAAAACGAGTTACCTGTGAAGAAAGAAGTTAGTGATGATGGTTCCTCGAGTGTTGAGATTGGGGATTTAGAATCTCAATCACGACTTAGTATGGAGAGGGAGATGGGATTGGCGAGTTGTCGTGTGTGCCAATGTGCTGAGTCTGATAAACGGGGTGATGCTGCCTTAGAATTTTTGGGCATCACCCCGGTTATAGAAAGCAAGGGGGAAGTAGTAAAGTCTGATGATGACAAGGGAAGTCCAAAAGATGTGACTCTTAACCGAAACTTTGGAAGCAAACCAGGGATGATGGAATTTGTAGGCCCAAATGGGGAGGTTTTCATTTGTAAGAATGATTTGGAAAATGGTTTGTCTCATGAAGATACGTTAATTGAACTTGGTTGTTGTTGTAAAAATGACCTTGCGTTAGTACATTATGCTTGTGCGCTCAAGTGGTTTATCAACCATGGATCTACCATTTGTGAAATATGCGGACATATAGCAAATAATATTAGAATATCTGACTTCAATAAGGTTATTGGTTCTTTAAAAGAGTACGAATCATTGAGGGAAAGAACTGTCAATGGAGTTCCGGGTCCTGCACAAGATCATCCAAATACTGGCGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGGTTAAGTGAAATTGCACTATGGTTTTGTCCTCATAATAGCAACAACTTTAACAACAATAGCAACATGGACTCAGTTTCCCAGCTTGTTTCTGAGCAGCCTTTGAATATTGTTGTCGAAGAAGCTGGCCCCGTACAGAATCCTGCAACTAAGTGGGCCGTAGAGTGTACAGGGATCCTTCTTGCTACAGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAATATTGCAAGAAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGATTTTTTTCCGCTTCTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATATTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACGCACAGTGCCCATACAACGTGA 1080 0.4287 MGKENELPVKKEVSDDGSSSVEIGDLESQSRLSMEREMGLASCRVCQCAESDKRGDAALEFLGITPVIESKGEVVKSDDDKGSPKDVTLNRNFGSKPGMMEFVGPNGEVFICKNDLENGLSHEDTLIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIANNIRISDFNKVIGSLKEYESLRERTVNGVPGPAQDHPNTGVDPDAVAAIRRQRLSEIALWFCPHNSNNFNNNSNMDSVSQLVSEQPLNIVVEEAGPVQNPATKWAVECTGILLATGLLTITLAWLIAPRVGKNIARSGLHILLGGVCALTVVIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05198 359 ProSiteProfiles Zinc finger RING-CH-type profile. 104 167 IPR011016 GO:0008270
Trre8g05198 359 Pfam RING-variant domain 123 160 IPR011016 GO:0008270
Trre8g05198 359 SUPERFAMILY RING/U-box 123 163 - -
Trre8g05198 359 SMART ringv_2 111 161 IPR011016 GO:0008270
Trre8g05198 359 PANTHER ZINC FINGER, RING-CH-TYPE 15 326 - -
Trre8g05198 359 MobiDBLite consensus disorder prediction 1 18 - -
Trre8g05198 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 170 IPR013083 -
Trre8g05198 359 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05198 Trre-Chr8 54281085 54283197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05198 1 349 C3H Transcription Factor Family AT5G08750 61.560 1.14e-144 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05198 - - gmx:100805323 526.939