Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05193 ATGCAAGGTGAATTATTAGAGTTTCCACCTGGGTTCAGATTTCATCCTACAGATGATGAGCTTGTGAATCACTACTTGTGTAGAAAGTGTGCTTCACTACCTATTGATGTTCCAATTATCAAAGAAATTGATTTGTATAAGTTTGATCCATGGCACCTTCCAGAAATGGCTCTTTATGGTGAGAAAGAATGGTATTTTTTCTCTCCAAGGGATAGAAAATATCCAAACGGTTCACGACCGAACCGGGCTGCGGGAACCGGATATTGGAAAGCCACTGGAGCCGATAAGCCGATTGGTAAGCCGAAGCCACTTGGAATAAAGAAAGCACTTGTGTTCTATGCTGGTAAAGCTCCTAAAGGTGTTAAAACCAATTGGATCATGCATGAGTATCGCCTTGCAAATGTTGATAGAACCGCATCAAAAAATAATCACAATTTAAGACTTGATGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAATGACACAAAGCCATCAATGTTTTTAGAGGAAGTTCAATTTGAGAATGAGAAGAAGCCTAAGATCGAAATGAACGGCCAGGATGATTTCAGGATAATTAATGATCAATTATACACTGACACGTCAGATTCAGTGCCACAGTTTCACACGGACTCAAGTTGTTCTGAGCACGTGGTTTCGCCGGATGTCACGTGCGATAAAGAGGTCCAAAGTGAGCCCAAATGGAATGAATTTGTTTTTGGCCCAGACCCAGTTTCAGCCTTTGATTTTCAATTGAATTTTATGGATGATGGTGAAGATGACTATTTTACCCCTCAGGTTCAGTATCAAATGAACAATAATAATCAGTTCTTGGGTTGGCAAGATGCGTTTATGTACCCACCTAAGTAA 888 0.3998 MQGELLEFPPGFRFHPTDDELVNHYLCRKCASLPIDVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRTASKNNHNLRLDDWVLCRIYNKKGKIEKYNDTKPSMFLEEVQFENEKKPKIEMNGQDDFRIINDQLYTDTSDSVPQFHTDSSCSEHVVSPDVTCDKEVQSEPKWNEFVFGPDPVSAFDFQLNFMDDGEDDYFTPQVQYQMNNNNQFLGWQDAFMYPPK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05193 295 FunFam NAC transcription factor 17 163 - -
Trre8g05193 295 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Trre8g05193 295 PANTHER NAC TRANSCRIPTION FACTOR 56 8 208 - -
Trre8g05193 295 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Trre8g05193 295 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Trre8g05193 295 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05193 Trre-Chr8 54266765 54267928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05193 4 292 NAC Transcription Factor Family AT1G01720 63.356 1.30e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g05193 NAM 9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05193 - - gmx:100170751 455.292