Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05181 ATGGCGAACAAGAGCGTGAAGAAACCACAGAGTCTCAACGATAGTCACTATCGCTTCCTTCAAGATCTCTCCGCTCCTCCCAAAACCTCTTCCAAACCACTCGCTGATGAAAACAATACTCCGATTCAACCTCGAAACCTCATCTACCAAGACGTTGATGATGATACCATTCCTCAGTTTTCTGCTATCACCGACTTCGATTCTCCAATCGGTCAAAATTCTCCCGAGAATATTGAACCAGTTAGGGTAGAAGAAGCTCCTCTTCGTAACGAGGTTCCACGATTTTTCGATAATTGTTCAATTAGTCAAAATTATGCAGAGAATCGCCAACCAGTTAAGGTAAAAGAAGCTCTTCTTCCAAAGGAGGAGGTTCCACAGAGTTTGAATAATAATTCTCTTAAGGAGGAAAAGAATACCAAGGTTAAGGTGCAAGGCCGCCGCCGCCTTTGCAAGGCTGCGGATAAAGAAGCTGGCAAAAAGGTGGCAGTTGATGAACCTAAGCTTGACGATCTTGCTGACTTCGATTCGCCTATTCCGGTGCAGAAAAATGTGATTGAGATTGAAGAAAGTAAGGGTAAGAGTCAAATTAGGGATATTTTGAATGACCTAACCTCCAGGTTTGATGCGCTATCGGTTGAGAAGAAGCCGCAGCCCAAACCAGTGCCAAAGCCTGTTGAGCGTTTTGGAGGGAAAGAAATTTTTGAAGATGAGGGTTTGGAGTTTGGGAGTGCTGGATCTTCATTTTCTCCGAAACAGGAGCTCCATGACACCTCATCAAAGGATACTAAGAATGATAGTGGTGATATTGAGTATGAATCAGATGATTCAGTTCAAGAGTTGGATCACTTTGAGCCTGAGAATGATGGCTCTATAACATTGAGTGACCCACGGTCTACATATAAGTTGCAGCCTAAGATTGCGAAAATGTTGTATCCGCATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTTTGGCTGGACTGTTTTATTCACGTTTAATCAGAAGGGTATTGGTTGTGGCCCCAAAAACACTATTGCCACATTGGATCAAAGAGTTATCGGCTGTTGGTCTATCTGAGAAGACAAGAGAATATTTTGGATCCTGTGCCAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACTTATGATATTGTCCGCAACAATACCAAGTCCTTACGGGGGCATAGTTATGTAGAAGATGAGGATGATGAAGATGGCCCCACGTGGGACTACATGATACTTGATGAGGGCCACCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAATTTTTGCTGCCCTGAGTTGCTTGGCGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCTTCTGACAGAGACAAGCGTGTTGGTTCAGCTATAGCAAAGGAGCTAAGAGATCATATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGATACGGAAAAAACAACAGCAAAGCTTTCTCAGAAACGAGAAATCATTGTGTGGCTTCGGTTGACCAATATTCAGCGACATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGTTCACCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCGATGCTAAAGCCAGATGAGGTTAGTGTTGCAGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACAGATAAGTTTAAAGATGAGCATGATGTATCGTGCAAAATTACTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGGGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCATAACATCTAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAATCTTGTGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCTCCAATATTTCTGTTGACATCTCAGGTTGGTGGTTTAGGACTGACACTTACAAGAGCGGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTCTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAAAAGAAAGAACAAACTCGATACTTTTGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTGTCTGTCACCCAACGGCAATTGGCTGAGAAACATGATTCTCAACATATAGTGGATGACTCTTTCCATGCACATATAGAGTTCCTGAAAAGTCAGGGCATAGCAGGAATTAGTCACCACAGTTTACTGTTTTCCAAGACGGAGCCAGTTCAAGAAGCTCCTGAGCATGAAGTATCAAGGATTCATAATACACAATATATTGGAACTTCGTCGTCAACATCATATTCACATGAGCAAATTGTTGACGGAGCTGCATTTGCTTTTAATCCTAAGGATGTTAATTTACGTAAAAAAGATTCTTCTCCAAGCAGTGTTGGTAAATTGACCGAGTTAGAAATCAAAGATAGAATTTATCGGCTCTCTCAAATGCTCTCAGATAAGGTGATGATTTCTAAATTACCTGACAAAGGAGAGAAACTTAAAAATCGGATTGTGGAGCTGAATCGAGAGCTTACTAAACTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACCGATGAATTTGAGAGGGTGGTAAATGTATAG 3054 0.4083 MANKSVKKPQSLNDSHYRFLQDLSAPPKTSSKPLADENNTPIQPRNLIYQDVDDDTIPQFSAITDFDSPIGQNSPENIEPVRVEEAPLRNEVPRFFDNCSISQNYAENRQPVKVKEALLPKEEVPQSLNNNSLKEEKNTKVKVQGRRRLCKAADKEAGKKVAVDEPKLDDLADFDSPIPVQKNVIEIEESKGKSQIRDILNDLTSRFDALSVEKKPQPKPVPKPVERFGGKEIFEDEGLEFGSAGSSFSPKQELHDTSSKDTKNDSGDIEYESDDSVQELDHFEPENDGSITLSDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFYSRLIRRVLVVAPKTLLPHWIKELSAVGLSEKTREYFGSCAKLREYELQYILQDKGVLLTTYDIVRNNTKSLRGHSYVEDEDDEDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDRDKRVGSAIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKREIIVWLRLTNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEVSVAEKLAMHIADVAETDKFKDEHDVSCKITFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDFLRIDGTTKSCDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEKKEQTRYFCQQDLKELFSLPKEGFDVSVTQRQLAEKHDSQHIVDDSFHAHIEFLKSQGIAGISHHSLLFSKTEPVQEAPEHEVSRIHNTQYIGTSSSTSYSHEQIVDGAAFAFNPKDVNLRKKDSSPSSVGKLTELEIKDRIYRLSQMLSDKVMISKLPDKGEKLKNRIVELNRELTKLKMEQTNVVDLDDITDEFERVVNV 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05181 1017 MobiDBLite consensus disorder prediction 242 295 - -
Trre8g05181 1017 Pfam Helicase conserved C-terminal domain 667 779 IPR001650 -
Trre8g05181 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 547 IPR027417 -
Trre8g05181 1017 PANTHER SNF2/RAD54 FAMILY MEMBER 134 951 - -
Trre8g05181 1017 MobiDBLite consensus disorder prediction 254 288 - -
Trre8g05181 1017 Pfam SNF2-related domain 327 617 IPR000330 GO:0005524|GO:0140658
Trre8g05181 1017 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 322 497 IPR014001 -
Trre8g05181 1017 MobiDBLite consensus disorder prediction 1 46 - -
Trre8g05181 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 839 IPR027417 -
Trre8g05181 1017 CDD SF2_C_SNF 659 790 - -
Trre8g05181 1017 SMART ultradead3 305 505 IPR014001 -
Trre8g05181 1017 FunFam Protein CHROMATIN REMODELING 24 289 567 - -
Trre8g05181 1017 Gene3D - 284 546 IPR038718 -
Trre8g05181 1017 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 670 829 IPR001650 -
Trre8g05181 1017 Gene3D - 566 865 IPR027417 -
Trre8g05181 1017 SMART helicmild6 696 779 IPR001650 -
Trre8g05181 1017 Coils Coil 977 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05181 Trre-Chr8 54172542 54181324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05181 310 833 RAD5 or RAD16-like Gene Family AT1G02670 24.912 1.83e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre8g05181 SNF2_N 1.9e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05181 K20093 - gmx:100779283 1467.21