Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05180 ATGGCGAACAAGAGCGTGAAGAAACCACAGAGTCTCAACGATAGTCACTATCGCTTCCTTCAAGATCTCTCCGCTCCTCCCAAAACCTCTTCCAAACCACTCGCTGATGAAAACAATACTCCGATTCAACCTCGAAACCTCATCTACCAAGACGTTGATGATGATACCATTCCTCAGTTTTCTGCTATCACCGACTTCGATTCTCCAATCGGTCAAAATTCTCCCGAGAATATTGAACCAGTTAGGGTAGAAGAAGCTCCTCTTCGTAACGAGGTTCCACGATTTTTCGATAATTGTTCAATTAGTCAAAAATCTCGGGAGAATTGTCAACCACGTGTGGTAGAAGAAGCTCCTCTTTCTAACGAGGTTCTGCAGTTTTTTAATGATTATTCTCATCGTCAAAATTCTCGAGAGAATCGCAAACCAGTTAAGGCAGTAGAACCTCTTAGTCAAAATTATGCAGAGAATCGCCAGCCAGTTAAGCCAGTAGCTCCTCTTAGTCAAAATTATGCAGAGAATCGCCAACCAGTTAAGGTAAAAGAAGCTCTTCTTCCAAAGGAGGAGGTTCCACAGAGTTTGAATAATAATTCTCTTAAGGAGGAAAAGAATACCAAGGTTAAGGTGCAAGGCCGCCGCCGCCTTTGCAAGGCTGCGGATAAAGAAGCTGGCAAAAAGGTGGCAGTTGATGAACCTAAGCTTGACGATCTTGCTGACTTCGATTCGCCTATTCCGGTGCAGAAAAATGTGATTGAGATTGAAGAAAGTAAGGGTAAGAGTCAAATTAGGGATATTTTGAATGACCTAACCTCCAGGTTTGATGCGCTATCGGTTGAGAAGAAGCCGCAGCCCAAACCAGTGCCAAAGCCTGTTGAGCGTTTTGGAGGGAAAGAAATTTTTGAAGATGAGGGTTTGGAGTTTGGGAGTGCTGGATCTTCATTTTCTCCGAAACAGGAGCTCCATGACACCTCATCAAAGGATACTAAGAATGATAGTGGTGATATTGAGTATGAATCAGATGATTCAGTTCAAGAGTTGGATCACTTTGAGCCTGAGAATGATGGCTCTATAACATTGAGTGACCCACGGTCTACATATAAGTTGCAGCCTAAGATTGCGAAAATGTTGTATCCGCATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTTTGGCTGGACTGTTTTATTCACGTTTAATCAGAAGGGTATTGGTTGTGGCCCCAAAAACACTATTGCCACATTGGATCAAAGAGTTATCGGCTGTTGGTCTATCTGAGAAGACAAGAGAATATTTTGGATCCTGTGCCAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACTTATGATATTGTCCGCAACAATACCAAGTCCTTACGGGGGCATAGTTATGTAGAAGATGAGGATGATGAAGATGGCCCCACGTGGGACTACATGATACTTGATGAGGGCCACCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAATTTTTGCTGCCCTGAGTTGCTTGGCGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCTTCTGACAGAGACAAGCGTGTTGGTTCAGCTATAGCAAAGGAGCTAAGAGATCATATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGATACGGAAAAAACAACAGCAAAGCTTTCTCAGAAACGAGAAATCATTGTGTGGCTTCGGTTGACCAATATTCAGCGACATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGTTCACCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCGATGCTAAAGCCAGATGAGGTTAGTGTTGCAGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACAGATAAGTTTAAAGATGAGCATGATGTATCGTGCAAAATTACTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGGGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCATAACATCTAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAATCTTGTGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCTCCAATATTTCTGTTGACATCTCAGGTTGGTGGTTTAGGACTGACACTTACAAGAGCGGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTCTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAAAAGAAAGAACAAACTCGATACTTTTGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTGTCTGTCACCCAACGGCAATTGGCTGAGAAACATGATTCTCAACATATAGTGGATGACTCTTTCCATGCACATATAGAGTTCCTGAAAAGTCAGGGCATAGCAGGAATTAGTCACCACAGTTTACTGTTTTCCAAGACGGAGCCAGTTCAAGAAGCTCCTGAGCATGAAGTATCAAGGATTCATAATACACAATATATTGGAACTTCGTCGTCAACATCATATTCACATGAGCAAATTGTTGACGGAGCTGCATTTGCTTTTAATCCTAAGGATGTTAATTTACGTAAAAAAGATTCTTCTCCAAGCAGTGTTGGTAAATTGACCGAGTTAGAAATCAAAGATAGAATTTATCGGCTCTCTCAAATGCTCTCAGATAAGGTGATGATTTCTAAATTACCTGACAAAGGAGAGAAACTTAAAAATCGGATTGTGGAGCTGAATCGAGAGCTTACTAAACTGAAGATGGAACAAACAAACGTAGTTGATTTGGATGATATTACCGATGAATTTGAGAGGGTGGTAAATGTATAG 3249 0.4087 MANKSVKKPQSLNDSHYRFLQDLSAPPKTSSKPLADENNTPIQPRNLIYQDVDDDTIPQFSAITDFDSPIGQNSPENIEPVRVEEAPLRNEVPRFFDNCSISQKSRENCQPRVVEEAPLSNEVLQFFNDYSHRQNSRENRKPVKAVEPLSQNYAENRQPVKPVAPLSQNYAENRQPVKVKEALLPKEEVPQSLNNNSLKEEKNTKVKVQGRRRLCKAADKEAGKKVAVDEPKLDDLADFDSPIPVQKNVIEIEESKGKSQIRDILNDLTSRFDALSVEKKPQPKPVPKPVERFGGKEIFEDEGLEFGSAGSSFSPKQELHDTSSKDTKNDSGDIEYESDDSVQELDHFEPENDGSITLSDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFYSRLIRRVLVVAPKTLLPHWIKELSAVGLSEKTREYFGSCAKLREYELQYILQDKGVLLTTYDIVRNNTKSLRGHSYVEDEDDEDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDRDKRVGSAIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKREIIVWLRLTNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEVSVAEKLAMHIADVAETDKFKDEHDVSCKITFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDFLRIDGTTKSCDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEKKEQTRYFCQQDLKELFSLPKEGFDVSVTQRQLAEKHDSQHIVDDSFHAHIEFLKSQGIAGISHHSLLFSKTEPVQEAPEHEVSRIHNTQYIGTSSSTSYSHEQIVDGAAFAFNPKDVNLRKKDSSPSSVGKLTELEIKDRIYRLSQMLSDKVMISKLPDKGEKLKNRIVELNRELTKLKMEQTNVVDLDDITDEFERVVNV 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05180 1082 Coils Coil 1042 1062 - -
Trre8g05180 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 612 IPR027417 -
Trre8g05180 1082 MobiDBLite consensus disorder prediction 307 360 - -
Trre8g05180 1082 Pfam Helicase conserved C-terminal domain 732 844 IPR001650 -
Trre8g05180 1082 Pfam SNF2-related domain 392 682 IPR000330 GO:0005524|GO:0140658
Trre8g05180 1082 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 387 562 IPR014001 -
Trre8g05180 1082 MobiDBLite consensus disorder prediction 1 46 - -
Trre8g05180 1082 FunFam Protein CHROMATIN REMODELING 24 354 632 - -
Trre8g05180 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 904 IPR027417 -
Trre8g05180 1082 Gene3D - 631 930 IPR027417 -
Trre8g05180 1082 SMART helicmild6 761 844 IPR001650 -
Trre8g05180 1082 Gene3D - 349 611 IPR038718 -
Trre8g05180 1082 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 894 IPR001650 -
Trre8g05180 1082 PANTHER SNF2/RAD54 FAMILY MEMBER 199 1016 - -
Trre8g05180 1082 SMART ultradead3 370 570 IPR014001 -
Trre8g05180 1082 CDD SF2_C_SNF 724 855 - -
Trre8g05180 1082 MobiDBLite consensus disorder prediction 319 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05180 Trre-Chr8 54172542 54181324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05180 375 898 RAD5 or RAD16-like Gene Family AT1G02670 25.610 3.24e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre8g05180 SNF2_N 2.1e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05180 K20093 - gmx:100779283 1466.44