Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05171 ATGGATGATGAGAGTCATAGTAGTTTGCCAAATGGATTCAGCACAGAAACTCCTGAAAATCATTGTTTAAAAACAAACAACACCAACAATAACAACAACAACAACAATAATCATCATCATAATAGCAATAAAGAACAAGACCGTTTTCTACCTATAGCAAATGTTGGTAGAATAATGAAAAAAGTTATTCCGGCAAATGGAAAAATCTCTAAGGACGCGAAAGAGACGGTACAAGAATGTGTGTCGGAGTTTATAAGTTTTGTCACGGGGGAAGCATCGGATAAATGTCAAAGAGAAAAAAGAAAGACGATTAATGGCGATGATATCATTTGGGCTATTACAACTTTAGGCTTTGAAGATTATGTGGAACCATTAAAATCTTACCTTCAAAAATATAGAGATATTGAAGGTGAGAAAGTTAATGTTCCAAAACAACAAAGATCTGAACAAAGGTTATTACATCATGATCAACATCATAACCAAGATGAGTTTAATAATAATCAACATTTCAACAACAGTGTATATACTTCAACAAATCTCATGTCTCAACCTTCTTATGTCACCAATGATCAACAATTTCCATTACCTTTCTCAACAAATTCAATTCAAAAACAGTTACGGCCGCAAGATCAGATTGATTCAATAGGTCATTGGTATGAATGA 663 0.3318 MDDESHSSLPNGFSTETPENHCLKTNNTNNNNNNNNNHHHNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLLHHDQHHNQDEFNNNQHFNNSVYTSTNLMSQPSYVTNDQQFPLPFSTNSIQKQLRPQDQIDSIGHWYE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05171 220 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Trre8g05171 220 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Trre8g05171 220 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Trre8g05171 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Trre8g05171 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 172 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre8g05171 220 MobiDBLite consensus disorder prediction 7 39 - -
Trre8g05171 220 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre8g05171 220 FunFam Nuclear transcription factor Y subunit B-3 24 163 - -
Trre8g05171 220 Gene3D Histone, subunit A 35 174 IPR009072 GO:0046982
Trre8g05171 220 MobiDBLite consensus disorder prediction 1 46 - -
Trre8g05171 220 SUPERFAMILY Histone-fold 46 163 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05171 Trre-Chr8 54109015 54109677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05171 3 218 CCAAT-HAP3 Transcription Factor Family AT2G13570 60.714 4.07e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre8g05171 CBFD_NFYB_HMF 3.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05171 K08065 - gmx:100778216 332.798