Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05164 ATGCAAGGGTGTGAAGTTGAAGCCATTGGCATAAACTACAAAATCCACACAAACAAAGCAGAACACCCTTTTAAAATCTTCAGCAAATCTCCACAACTAGATAATGTCAATGGTCAAGAAATAGAAGAGGAAGAAGCAGGAGTTGAAAAAAGTTGCAGTGGAGTTAGGCATGTGCTCAAGAATGTGAGTTTTCAAGCCAGACCATGGGAAATCCTAGCAATTGTTGGACCAAGTGGAGCTGGAAAGTCATCACTACTTGAGATCTTAGCAGTTGAAGAAACCATGATGTTCAGTGCAAAACTAAGGCTTAAGCTTCCTCAACAACAACTATGTTCAAGGGTCAAGTCGTTGATTCAAGAGCTTGGACTTGATCATGTTGCGGGGACTCGAATTGGTGATGATCGAGTCCGAGGTATATCAGGCGGTGAAAGGCGCAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTTTTGATTCTTGATGAGCCAACTTCAGGACTTGATAGTACTTCAGCTTTGCAAATAATTGATATGCTTAAGGTTATGGCTGAAACTAGGGGAAGAACTATAATACTAAGTATTCACCAACCTGGTTTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCTAATGGTTCTGTGCTTCATCATGGAACTGCTGAATTACTGAGTTTGAATTTGAGATTGATGGGTCTAGAGCTTCCACTACATGTTAATTTAGTTGAATTTGCAATTGATTCCATTGATATCATTCAACAACAACAGCAGCAACAATGTCAGGTGGAAACCGAACCGCCGAGACAATTGTTAGGAACAATGCAACAGAAGAAAGGTGGTGATGATGAACAACCACAACAACAACAATCAGGTGAGAGTAAAAGTGGTAAGTTCACTTTGCAACAGCTCTTTCAACAATCTAAAGTAATTGATGAAGATATCATCAATAGTACTGGAATGGATTTCTCTTATGATTTTGCAAATTCTAGATTGAGTGAAACTATGATTCTAACTCATAGATTCTCCAAAAACATATTTCGTACAAAAGAGCTATTTGCATGTAGGACAATTCAGATGCTGATTTCAGGACTAGTTTTAGGATCAATCTTTTGTAACCTCAAAGATGATATAAGAGGAACACAAGAAAGGATTGGTCTATTTGCTTTCATATTAACTTTTCTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTCTACAAGAAAGAGAGATTCTAATGAAAGAAACATCTTGTGGGAGCTACCGGGTATCGTCTTATGCTATTGCAAATGGCTTAGTTTACTTGCCATTTCTTCTAATCCTAGCCATTTTGTTCACAGTTCCATTATACTGGCTAGTTGGACTCAACAGAAACTTCACTGCTTTTTTGCACTTTCTGTTACTGATATGGCTTGTTCTTTATACAGCCAATTCAGTTGTGGTGTGTTTCAGTGCTCTTGTGCCTAATTTCATTGTTGGGAATTCAGTGATTAATGGTGTTATAGGTTCTTTCTTCTTATTCTCTGGTTACTTCATATCAAACCATGAGATTCCTAGTTACTGGATTTTCATGCATTATATATCACTTTTTAAGTATCCCTTTGAAGGGTTTCTAATCAATGAGTTCTCCAACTCAAAAAAGTGTTTGGAGTACATGTTTGGTGCATGTGTGATGAAGGGAGAGGATGTGCTTAAAGAAGCAGGGTTTGGAGGAGAAAGAAGTAGATGGAAGAATGTTGGTGTCACTGTTTGCTTCATCATGTTTTACAGATTCATTTCTTATGTTATTTTAAGATACAAATGTTCACAGAGAGGGATTAACAGTGGTAATTCTGTCATTGCATAA 1854 0.3743 MQGCEVEAIGINYKIHTNKAEHPFKIFSKSPQLDNVNGQEIEEEEAGVEKSCSGVRHVLKNVSFQARPWEILAIVGPSGAGKSSLLEILAVEETMMFSAKLRLKLPQQQLCSRVKSLIQELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTAELLSLNLRLMGLELPLHVNLVEFAIDSIDIIQQQQQQQCQVETEPPRQLLGTMQQKKGGDDEQPQQQQSGESKSGKFTLQQLFQQSKVIDEDIINSTGMDFSYDFANSRLSETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFCNLKDDIRGTQERIGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTVPLYWLVGLNRNFTAFLHFLLLIWLVLYTANSVVVCFSALVPNFIVGNSVINGVIGSFFLFSGYFISNHEIPSYWIFMHYISLFKYPFEGFLINEFSNSKKCLEYMFGACVMKGEDVLKEAGFGGERSRWKNVGVTVCFIMFYRFISYVILRYKCSQRGINSGNSVIA 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05164 617 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 240 IPR003439 GO:0005524
Trre8g05164 617 Gene3D - 11 92 IPR027417 -
Trre8g05164 617 SMART AAA_5 68 246 IPR003593 GO:0016887
Trre8g05164 617 ProSitePatterns ABC transporters family signature. 139 153 IPR017871 GO:0005524|GO:0016887
Trre8g05164 617 Gene3D - 93 300 IPR027417 -
Trre8g05164 617 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 89 595 - -
Trre8g05164 617 MobiDBLite consensus disorder prediction 276 299 - -
Trre8g05164 617 Pfam ABC transporter 112 167 IPR003439 GO:0005524
Trre8g05164 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 230 IPR027417 -
Trre8g05164 617 MobiDBLite consensus disorder prediction 282 299 - -
Trre8g05164 617 Pfam ABC-2 type transporter 337 545 IPR013525 GO:0016020|GO:0140359
Trre8g05164 617 Pfam ABC transporter 59 93 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05164 Trre-Chr8 54065444 54067417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05164 24 227 Calmodulin-binding Proteins AT2G36910 23.596 8.35e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05164 K05681 - gmx:100789722 953.74