Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05161 ATGATGGGGAGTGAAAATGTGAAGCTTCCTCCTGGGTTTTATTTTTGTCCAACGGATGAAGAACTAGTCCTTCACTTTCTATATTCCAAGGCTTCTTTACCATATCATCCTAACATCATACCTGAACTTTACTTATCTCACTTTGATCCTTGGGAACTATACGGTAAATCGTTGTCAAGTGGAAATCAGCACTACTTTTTCACCGAAGTGAAGGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAATTTGGGAATGAAGAAGTACCTTGTGTTCATCCTTGGGGAAGGAACTGAAACCAATTGGGTAATGGAAGAGTATCATATTTCCTCATATGAATCTAGGAGAAGTCAAAATCAGGATGGGAGTTGGAGCAACTGGGTTTTATGCAAAGTTTACGAAAAGAAGATGTCACAACAAGGTGCAAGTTATAGTGATGAGGACATTGATGACAATGGAACAGAGGTATCATGGCTAGATGAAGTTTTTATGTCCTTAGATGATGATGATCTTGATAACAAGTCTACTTAA 558 0.3763 MMGSENVKLPPGFYFCPTDEELVLHFLYSKASLPYHPNIIPELYLSHFDPWELYGKSLSSGNQHYFFTEVKENRSTENGYWKEIGVTKPINNLGMKKYLVFILGEGTETNWVMEEYHISSYESRRSQNQDGSWSNWVLCKVYEKKMSQQGASYSDEDIDDNGTEVSWLDEVFMSLDDDDLDNKST 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05161 185 Pfam No apical meristem (NAM) protein 10 118 IPR003441 GO:0003677|GO:0006355
Trre8g05161 185 PANTHER NAC TRANSCRIPTION FACTOR 56 9 154 - -
Trre8g05161 185 Gene3D NAC domain 18 148 IPR036093 GO:0003677|GO:0006355
Trre8g05161 185 ProSiteProfiles NAC domain profile. 9 144 IPR003441 GO:0003677|GO:0006355
Trre8g05161 185 SUPERFAMILY NAC domain 5 144 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05161 Trre-Chr8 54036674 54039747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05161 4 145 NAC Transcription Factor Family AT1G01720 43.038 1.10e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g05161 NAM 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05161 - - mtr:11435699 314.694