Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05159 ATGTCTGGTGAAGAAGGTGTTGTTGCAGCTGAGCCAGTTGTTCCTGCAGCTGGAGTTCCAGGGGAGCCAATGGACATCATGACTGCTGTACAGCTTGTGTTGAGAAAGTCACGCGCTTATGGTGGTCTTGCACGAGGTCTTCATGAGAGTGCTAAAGTGATTGAGAAGCATGCCGCACAGCTCTGCGTTCTAGCTGAAGATTGTGACCAACCTGATTACGTCAAGTTGGTGAAAGCTCTTTGTGCCGAGCACAGTGTTAGCTTGTTGACTGTTCCAAATGCAAAGACCCTCGGAGAATGGGCTGGTTTGTGCAAGATTGATTCAGAAGGAAAGGCTAGGAAGGTAACCGGTTGCTCTTGTGTGGTTGTCAAGGACTTCGGTGAGGAACACGAAGCATATAATGTGGTTCTTCAGCATGTGAAATCTAACTAA 432 0.4792 MSGEEGVVAAEPVVPAAGVPGEPMDIMTAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHSVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05159 143 PANTHER 40S RIBOSOMAL PROTEIN S12 20 142 - -
Trre8g05159 143 FunFam 40S ribosomal protein S12 10 143 - -
Trre8g05159 143 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 29 122 IPR004038 -
Trre8g05159 143 PRINTS Ribosomal protein S12E family signature 33 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g05159 143 PRINTS Ribosomal protein S12E family signature 113 126 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g05159 143 PRINTS Ribosomal protein S12E family signature 47 63 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g05159 143 PRINTS Ribosomal protein S12E family signature 88 109 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g05159 143 Gene3D - 11 143 IPR029064 -
Trre8g05159 143 SUPERFAMILY L30e-like 23 141 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05159 Trre-Chr8 54029961 54031152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05159 22 143 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 76.230 3.84e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05159 K02951 - gmx:100499723 251.136