Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05155 ATGCCGGCGTGGTGGAGTAGAAAGTCATCAAAGAACAAACAAGAGCGAGATATTAATACTAATAATAATGATGAAGAAGATGAAGAAGAACAATCACGTTCTGGTTCTGGAACTGGTGGTGTTCTTCAATTCAATTTCATGAAATCACCAATCAACGCAATAAGAAACAACAACAACAACAACAACGGTGATAGTATTAAGAAGAAAGAGAAGAAGAAGAAATCAAAGCCCAAGAGTTTTGATGAAGTTTTCAATCGGAATTCACCGAGGACTAGTAGAGAATTTGATGGCGGCGCCGCCACTCAAAACAAAGGACTTCCGTTACCTCTTCCTGTTAATACCGATCAAGGATCTCTTTCCGGTTCTGGTTCCAGCGTCAGTTCATCTACCTCTTTTAGTGATCATCCAATCTCTCCTCAATTCACTTCCAACAATAGAGGACAAGATGAGGTGAAGTTCACTGTTAGGCCAAAAAGTCCAGGTCCTGCGTCAAGAGGACCCACTAGTCCTACATCACCTCTTCATCCAAGGTTGCAGCAGGCTTTGAGTCTTGACTCACCTACGGGAAAGCAAGACGATGGAAGGAGTCAATGTCATCCATTGCCTCTTCCACCGGGATCTCCTACTAGTCCTTCTTCTGCTCTTTCCAACACACGGCCTAATGGACCGTTTGAAAATCCTATCCCTAACCTGTCCAAGTGGAAGAAAGGAAAGCTTCTTGGCCGGGGAACATTTGGGCATGTTTATCTGGGATTTAATAGTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAGGCTTGGCTGTGATGATCAAACTTCAAATGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTTAAGGAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGAACCGGGAGAAGAGTCACTTTCTGTTTATCTGGAATTTGTCTCTGGTGGTTCTATCCATAAATTACTTCAGGAATATGGCCCGTTCAAGGAGCCTGTTATTCAAAATTACACCAGGCAGATTGTCTCTGGACTTGCTTATTTACATGCAAGAAATACAGTACACAGGGATATCAAAGGGGCCAACATACTAGTTGATCCTAATGGTGAAATCAAACTAGCAGACTTTGGAATGGCTAAACATATAACTAATGCTGCCTCAATGCTTTCATTCAAAGGAAGTCCGTACTGGATGGCACCTGAGGTTGTAATGAACGCAAATGGCTATAGCCTTGCAGTTGATGTATGGAGCTTGGGATGCACACTTATTGAAATGGCAGCATCGAAACCTCCATGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATTCCTGAGCATCTTTCAAATGATGCGAAGAATTTCATTATGTTATGTTTACAACGGGACCCATCAGCTCGCCCAACAGCCCAGAAATTACTAGAGCACCCCTTCATTAGAGATCAATCAGCAACAAAAGCTGCAACCAGAGATGTTTCCTCTTACATGTTTGATGGAAGCAGAACACCGCCTGTTTTAGAGCCCCATTCCAATCGAAGAAGTATAACTTCACTTGATGGAGACTATGCAACAAAGTCAGCTATTGTAGCTCCACGTGCAGTAAGGAGTCCAAGAGATCACACAAGAATGATCACATCTTTACCGGTATCTCCTTCTTCAAGCCCGTTGCGACAGTATGGAACGGATCATAGGAGCTGTTTCTATTCTCCTCCTCATCCATCTTACACAATAATGGGACAAAATAGTTACACTTTGAATGACACACCCTCTTATCCAGTGAGATCAAATGCAACATTTACTCTTGATCCTTGGCATGAAACATCCAGATACAAAGCCCACACACCACCTGGTGGGTCTCCAAGAATGAGATTCATTTGA 1911 0.4244 MPAWWSRKSSKNKQERDINTNNNDEEDEEEQSRSGSGTGGVLQFNFMKSPINAIRNNNNNNNGDSIKKKEKKKKSKPKSFDEVFNRNSPRTSREFDGGAATQNKGLPLPLPVNTDQGSLSGSGSSVSSSTSFSDHPISPQFTSNNRGQDEVKFTVRPKSPGPASRGPTSPTSPLHPRLQQALSLDSPTGKQDDGRSQCHPLPLPPGSPTSPSSALSNTRPNGPFENPIPNLSKWKKGKLLGRGTFGHVYLGFNSENGQMCAIKEVRLGCDDQTSNECLKQLNQEINLLKELSHPNIVQYYGSEPGEESLSVYLEFVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKHITNAASMLSFKGSPYWMAPEVVMNANGYSLAVDVWSLGCTLIEMAASKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIMLCLQRDPSARPTAQKLLEHPFIRDQSATKAATRDVSSYMFDGSRTPPVLEPHSNRRSITSLDGDYATKSAIVAPRAVRSPRDHTRMITSLPVSPSSSPLRQYGTDHRSCFYSPPHPSYTIMGQNSYTLNDTPSYPVRSNATFTLDPWHETSRYKAHTPPGGSPRMRFI 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05155 636 ProSitePatterns Protein kinases ATP-binding region signature. 240 263 IPR017441 GO:0005524
Trre8g05155 636 SMART serkin_6 234 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05155 636 MobiDBLite consensus disorder prediction 75 89 - -
Trre8g05155 636 MobiDBLite consensus disorder prediction 34 63 - -
Trre8g05155 636 FunFam Mitogen-activated protein kinase kinase kinase 232 511 - -
Trre8g05155 636 SUPERFAMILY Protein kinase-like (PK-like) 232 570 IPR011009 -
Trre8g05155 636 Gene3D Transferase(Phosphotransferase) domain 1 231 513 - -
Trre8g05155 636 MobiDBLite consensus disorder prediction 170 193 - -
Trre8g05155 636 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 4 502 - -
Trre8g05155 636 MobiDBLite consensus disorder prediction 210 225 - -
Trre8g05155 636 ProSiteProfiles Protein kinase domain profile. 234 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g05155 636 MobiDBLite consensus disorder prediction 107 150 - -
Trre8g05155 636 MobiDBLite consensus disorder prediction 1 233 - -
Trre8g05155 636 Coils Coil 11 31 - -
Trre8g05155 636 CDD STKc_MEKK1_plant 233 490 - -
Trre8g05155 636 Pfam Protein kinase domain 235 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05155 Trre-Chr8 54007210 54011445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05155 1 549 MAP Kinase Kinase Kinase AT1G53570 53.472 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre8g05155 Pkinase 1.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05155 K04421 - gmx:100787064 865.914