Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05149 ATGGTAATGACAATGAGGACCCATCTGCCCAGAAGAAGCCCCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTGGGCATTGACAATATTTATTGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGGGTTGAAGAGCTATCTAAAAGATTGGTTGGAACCTTGTTGGAACTGATGGATGGAATTGGTATAAATGGAGGATTAGTTGTAATTGCTGCTACAAATAGGCCTGACCATATTGATCCAACTCTCAGACAGGGTGGAAGATTTGACAAGGATATTGAAATTGTACTATTTTGGGCCGTGTTGTGTACACTGATTTTCAAGCATGTCATTCATGGCTACAATCGTGTGATCAAGCTGCAATCAATTAAGTTGTGCTGA 411 0.4234 MVMTMRTHLPRRSPGLFGLWSCTASLLLLLISWALTIFIDEIDAIAPPRKDGVEELSKRLVGTLLELMDGIGINGGLVVIAATNRPDHIDPTLRQGGRFDKDIEIVLFWAVLCTLIFKHVIHGYNRVIKLQSIKLC 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05149 136 Gene3D - 23 106 IPR027417 -
Trre8g05149 136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 105 IPR027417 -
Trre8g05149 136 PANTHER AAA DOMAIN-CONTAINING 37 101 IPR045199 -
Trre8g05149 136 Pfam ATPase family associated with various cellular activities (AAA) 37 105 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05149 Trre-Chr8 53963871 53965269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05149 37 105 Calmodulin-binding Proteins AT3G56690 66.667 2.16e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05149 - - vum:124834498 104.76