Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05139 ATGGCTATAACGAATATGATTCCGGGATTTCGATTCCATCCTACTGGAGTTGAATTGATGAAGTACTTTCTGAAAAGGAAAGTAATGGGAAAAAAGTTTCATAATAATGTCATTGCTGAACTTGACATATACAAATATGCTCCTTGGGATCTCCCAGATAAATCTTATTTACAAAATGGGGATTTAGAATGGTACTTCTTCTGCCCGATTGAGAAGAAGTATGGAAGTGGGGGGAGGTTGAATCGAGCTACGGAAATTGGGTTTTGGAAAGCTACTGGTAAGGATAGAGCTGTGCAACATAAGAATCAAACTGTTGGGATGATAAAAACCTTGATATTTCACACTGGAAAAGCTCCTCGTGGTGATCGAACCGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTGGCTGACAGAGGAATTGTTCAGGATTCCTATGTAATCTGTAAAGTGTTTCAAAAGGAAGGTCCTGGTCCAAGAAATGGTGCACAATATGGCAGGCCATTTAATGAAGAAGACTGGAGTGATGATGAAGTTGGATTACCTTTTGCTGGATCGGCTGCGCTAGCCCCCAGTTTGGCTGTGACAACTATTAGTTCTGTTCTAAATGACCAAAATCTTCATGCTAGTGGATATGGTTCAATATCCATGCCATGTCAATTAACATCGACCCCTTCTCCCTACCCAACTAATTCCTGTCAAACTGGATTAGATCTTTCTCCCGACGCTGTCTATTCATGTCAAACAGGATTGATGTCTTCTCCTGATGCTATGAGATCATGTGAAACAGGATTGATACCGTCTCCCGATCCTGCGAATTCATGTCAAACAGGATTGGTACCTTCTGACCCTGCGGATTCATGTCAAATGGGATTGATGCTGCCTTCTCCCGACCCTGCAAATTCATGTCAAACAGGATCAATGTATTCTCTCAACCCTGCAAATTCATGTCAAACAGGATCGATGCCTTCTCTCGACCCAGCAAATTCTTGTCAAACAGGATTGATGCCTTCTCTCGACCCTGCAAATTCATGTCAAACAGGATCGATGCCTTCTCCTGACCCTGCGAATTCATGTCAAACTGGATCAATTATTTCTCCTGACCCTGCAAATCATTCATATCCAGACAATCAAGCTGTTAATAATGATGATATTTTATCAATGCTTGATATTTTCAAAGACAATGACATATTTCCTGAGGAAAATATTGCTGAAGGTGCACTTTTAAATAACTTTTTTGAGGGTTTGGGAGATCTGGACTGTTCGGCGTTGGGATCCTTTGGCCAGAATGCCGAGTTTAGCACAAACGGAATGGCTACTATGGGTGACGAGTTAGATTTCGTTGAGTTGACTGATCTAGACTCTGAGTTGTTCTGGCAGAGTACTACACAACCTGGAAGCTGGAGTCAAAATAAATAA 1425 0.4161 MAITNMIPGFRFHPTGVELMKYFLKRKVMGKKFHNNVIAELDIYKYAPWDLPDKSYLQNGDLEWYFFCPIEKKYGSGGRLNRATEIGFWKATGKDRAVQHKNQTVGMIKTLIFHTGKAPRGDRTDWVMHEYRLEDKDLADRGIVQDSYVICKVFQKEGPGPRNGAQYGRPFNEEDWSDDEVGLPFAGSAALAPSLAVTTISSVLNDQNLHASGYGSISMPCQLTSTPSPYPTNSCQTGLDLSPDAVYSCQTGLMSSPDAMRSCETGLIPSPDPANSCQTGLVPSDPADSCQMGLMLPSPDPANSCQTGSMYSLNPANSCQTGSMPSLDPANSCQTGLMPSLDPANSCQTGSMPSPDPANSCQTGSIISPDPANHSYPDNQAVNNDDILSMLDIFKDNDIFPEENIAEGALLNNFFEGLGDLDCSALGSFGQNAEFSTNGMATMGDELDFVELTDLDSELFWQSTTQPGSWSQNK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05139 474 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Trre8g05139 474 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Trre8g05139 474 FunFam Nac domain-containing protein 86 15 159 - -
Trre8g05139 474 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 255 - -
Trre8g05139 474 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Trre8g05139 474 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Trre8g05139 474 MobiDBLite consensus disorder prediction 319 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05139 Trre-Chr8 53893326 53895998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05139 1 245 NAC Transcription Factor Family AT5G09330 51.751 1.21e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g05139 NAM 5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05139 - - tpra:123913689 698.353