Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05128 ATGGAAAATAACCAAATTAATAATAGTAGTAGTAGTGCATTCACAAGCACTTGGAATCTTGAGAAAATGGAAACAAATGAACAAAACCGTATCATTCTCCAACAAGATCATCATCAAATTCCTATGAGTTCTTCTTTGATTTGGCCACAAATTAACTACAACAACATGATGATACCACCACCACCACCACCACCATCTTCATCAGGTTCTCTAAGTGACATATTAGGGATCCACCAAATTGATCAAGATGTTGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGATATCGATCCCGCAACTATTCGAAAACCAAAGCGAAGAAATGTTCGAATAAGCGAGGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATTAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAATTCTTGAAGAGACAAATTAGGTTGCTTCAATCCACTCCTCAAAATCATCAACAACAACAACAAAATCAATTACCATTTTCATCACAATGCATTAATTCTACTCCTCCAAGTGCTTTATTATTGTCCCCTTCGGGTTGTGACGCTTGGCCTTTTGCACCGAATTTACTACTCACTTCCACAACGTCCGCATCGGTCGACTTACCCGCCGGAGTTCAATTTGACGCCGGAGGACACTCTCATTCACATGCTTGTGATGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTAA 810 0.3951 MENNQINNSSSSAFTSTWNLEKMETNEQNRIILQQDHHQIPMSSSLIWPQINYNNMMIPPPPPPPSSSGSLSDILGIHQIDQDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISEDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQNHQQQQQNQLPFSSQCINSTPPSALLLSPSGCDAWPFAPNLLLTSTTSASVDLPAGVQFDAGGHSHSHACDGSSSFNHHEVISE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05128 269 Coils Coil 77 97 - -
Trre8g05128 269 SMART finulus 130 179 IPR011598 GO:0046983
Trre8g05128 269 Pfam Helix-loop-helix DNA-binding domain 134 173 IPR011598 GO:0046983
Trre8g05128 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Trre8g05128 269 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 209 IPR045843 GO:0003700|GO:0006355
Trre8g05128 269 FunFam BHLH transcription factor 127 191 - -
Trre8g05128 269 CDD bHLH_AtIND_like 125 182 - -
Trre8g05128 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 192 IPR036638 GO:0046983
Trre8g05128 269 Gene3D - 127 196 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05128 Trre-Chr8 53813392 53814201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05128 93 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 82.022 5.28e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g05128 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05128 - - psat:127102813 369.007