Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05125 ATGAGTGGAAGTGGCAGAAAGCTATCTTCAAACTGGGATTCAAGAGATGAACCTGAGTTTGCATCTGAGAGTGTTACTAATAGCAATAGTTCAAGGTATTCAGAAAGAAATGATATGCTAAATTCCAGAATGGGATTTTCACGAACGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGATGATGTTAGGAGCGGAGACTACAAAGTTTTGGATGCTACAATTGCACAAGATACTGATGGAAGTTACAATATGAAAACGTCTCCAGAGTTTGAGGAATGGAAAAATAGGAAGCATAGTCAATATTCAAAAAATGATTACGGCAGGAGAAGTAGGAGCCGGAGCCGGAGCCCTTCACGTGGTTTTAGGTATTCAGATGTCGATGATAGGAACAGAATGAGGGCTGGCAGATCGACAAAACCTTGTAGAGATTTTGCTGTTGGGAACTGTAGAAGAGGCAGCACTTGTCATTTCCTTCACCATGATAACCAGAGTTACGAGGATAGCAGGGAAAGTAGACACAGGCAAGATGGACCCAGATATTCTAATCCCCGTGAGAGTGGGGATTATTCTCATACAAATCGACGATCTAATGAAGCTTGTATTAATTTTGAAAAGGGAAGGTGTAGAACGGGAGAATCATGCAGGTATGTCCATCATGGCAAATCTGATGGGTTTGATAAAGTTTCCGCATATGAATCATCTAGGGAAAGGGAAGTTGATAGAAGACACATGGATAATTCATTCAAGCAGGGTGGTCAACATTATCCAAACCACAAGAGTAATATTCCTTGCAAATATTTTGCTCTTGGAAATTGTCTTTACGGTAAAGATTGTAGGTTTTCTCATGATAGACAGTCATCTACTAGCCCTAGATTAAGGGATGATAGATCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGGATAGACAAAAAATGAGCGATTCAGTTACTCCTAATGGAAGGCCAAGGGGCGACAGATGGGTTTCAGATGGCAGTATGGCTGAGGTAGATAAAGTTTGGGATGGTCCAAAGCAAAATGATTTAGTCGCTGTCTCTGATACAACACAGCTGGTTGAGGACAAATATAATGGAATTACAGGCGCCCCAGAACCTGGATTCATGACTTGGCCAATGAATGATGGATTGGATCATAGCTTAAACCAGAACAGAGTGCATAATGAATTGCCATTTTCAATTGATAAGAAGGAAGCCAACTGTCGGACAGAAGAAAATGCAGTTGACAACATTCTCCTTTCTCAGTCACTAGGTGGGGGCATTTGGCCCGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGTGCGAGATCTTCCAGCCATATTAAAGATGAGGATGGGCATAATAAGCATCAAGTTGCTCCAGGTCAAGGACTAAATCAGAATGCTCAGAACATGACTGCTTCCCACGTGGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCTCCGAGAGCAAGAATTATTGAAGGTATACAGAACCAGGAACTCTACACTGAGAAAAACTACATTGTAGAACCAAATATCACGAATGCAAGCCTATCACAGACCAGTTCAGTAATTACTCCAACTCAGAACATTGTCAGCAAAGAACAACTTGCTCAACTTAGCTGCCTCTCGGCCTCTCTCGCACATATCCTTGGAACAGATCAGCGGCTTTCACAACTTCATTCTACTTTAAAGTCTTGTGATGCAAAGGACACTCTCTTCGTAAACAAAATTGAAGGGTCTAGTAATCCTGTTTCCATGACATTCATCAAACCTGATCCTGCTATTGGATTGAAGCAGTATGATCCAATGTGTGATAGTATAGAGCCCACGAATATCAATGCAAGTGGGGTCTCTCCAACCTTTTCTCCTAGTATAAATGTTGCTAAAAATCCAGTGGTAATTCCACCACCGTTATCTAACCTGGGACAAAATTTTGATGATTCTCGTAAAAAGGAAACTAACAAAATGGTAGCTGAAGTAAAGCCAAGCTCTCAAGCTGAAAATAAAATTACAGAAGAGAATAGTCCTTTGGAAAACATCGACCAAGATGATGGACCTGATGAGGGCAAGAAAACAAAGGATGTAAAGGGGATTCGTGCATTTAAATTTTCATTGGTAGAGCTCACTAAGGAGATTCTGAAACCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGAGAAAGTAACCGGTACAGTACAGCGGGTACATATTCCTCAGACACAAGAGAAAATTGAACGCTACTTATCAGTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2349 0.4083 MSGSGRKLSSNWDSRDEPEFASESVTNSNSSRYSERNDMLNSRMGFSRTEPFSGGRGSNKDDVRSGDYKVLDATIAQDTDGSYNMKTSPEFEEWKNRKHSQYSKNDYGRRSRSRSRSPSRGFRYSDVDDRNRMRAGRSTKPCRDFAVGNCRRGSTCHFLHHDNQSYEDSRESRHRQDGPRYSNPRESGDYSHTNRRSNEACINFEKGRCRTGESCRYVHHGKSDGFDKVSAYESSREREVDRRHMDNSFKQGGQHYPNHKSNIPCKYFALGNCLYGKDCRFSHDRQSSTSPRLRDDRSRSNQGEDQVLDRQKMSDSVTPNGRPRGDRWVSDGSMAEVDKVWDGPKQNDLVAVSDTTQLVEDKYNGITGAPEPGFMTWPMNDGLDHSLNQNRVHNELPFSIDKKEANCRTEENAVDNILLSQSLGGGIWPGDEKMSPDWNYGARSSSHIKDEDGHNKHQVAPGQGLNQNAQNMTASHVVGQSQATVSIVPPRARIIEGIQNQELYTEKNYIVEPNITNASLSQTSSVITPTQNIVSKEQLAQLSCLSASLAHILGTDQRLSQLHSTLKSCDAKDTLFVNKIEGSSNPVSMTFIKPDPAIGLKQYDPMCDSIEPTNINASGVSPTFSPSINVAKNPVVIPPPLSNLGQNFDDSRKKETNKMVAEVKPSSQAENKITEENSPLENIDQDDGPDEGKKTKDVKGIRAFKFSLVELTKEILKPTWKDGKITKEDYKAIVKKVTEKVTGTVQRVHIPQTQEKIERYLSVSKPKLNKLVQAYVEKVQKA 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05125 782 ProSiteProfiles Zinc finger C3H1-type profile. 195 223 IPR000571 GO:0046872
Trre8g05125 782 Pfam RNA-binding, Nab2-type zinc finger 200 219 - -
Trre8g05125 782 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 161 IPR000571 GO:0046872
Trre8g05125 782 MobiDBLite consensus disorder prediction 164 194 - -
Trre8g05125 782 MobiDBLite consensus disorder prediction 90 139 - -
Trre8g05125 782 MobiDBLite consensus disorder prediction 661 678 - -
Trre8g05125 782 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Trre8g05125 782 Gene3D - 136 224 - -
Trre8g05125 782 ProSiteProfiles Zinc finger C3H1-type profile. 260 286 IPR000571 GO:0046872
Trre8g05125 782 MobiDBLite consensus disorder prediction 21 54 - -
Trre8g05125 782 MobiDBLite consensus disorder prediction 164 182 - -
Trre8g05125 782 Gene3D - 231 295 - -
Trre8g05125 782 MobiDBLite consensus disorder prediction 641 696 - -
Trre8g05125 782 MobiDBLite consensus disorder prediction 283 311 - -
Trre8g05125 782 SMART c3hfinal6 260 285 IPR000571 GO:0046872
Trre8g05125 782 SMART c3hfinal6 136 162 IPR000571 GO:0046872
Trre8g05125 782 SMART c3hfinal6 196 221 IPR000571 GO:0046872
Trre8g05125 782 MobiDBLite consensus disorder prediction 1 144 - -
Trre8g05125 782 Pfam CCCH-type zinc finger 264 284 IPR041367 -
Trre8g05125 782 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 781 - -
Trre8g05125 782 MobiDBLite consensus disorder prediction 283 331 - -
Trre8g05125 782 SUPERFAMILY CCCH zinc finger 260 284 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05125 Trre-Chr8 53786196 53790919 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre8g05125 zf-CCCH 1.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05125 - K22909 gmx:100783856 830.861