Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05118 ATGGTTAGAGACGATTTATACATCACCGTTCCGAGTTTATTCCGGTGTCCTATTTCCCTCGACGTCATGAAATCTCCGATTCTTCAAACCAAAGATTTCGTTCCGAACCGGACGTTACAGAGACTCATCCAGATCTGGTCTGATTCGGTTCGTCACCGAGTCGACTCGAACGAGTCTATGATATCTAATGAATCGGTTGATAAACGTGATCAATTACTTGTTGCTATTACTGATTTAGAGTCCGGTAGTGAGAATCGGTTCGAGTCGCTTGAGAAAATTGTGCGGTTTGCTAAAGATTCTGAAGAGAATAGTGTTTTTCTGGCTAAAACGGAAGGATTCGTGGCTTTGTTGGTAGGTTTTCTTGATAATGTTGATGGTGGAGTTGAACTGAGTGTTGAATTGCTTGAACAAGTTGTTGTTGCGTTGGATTTGGTTCTAAGTAAAATAGAGAATCGTGACTCGATTTTGAAGAGCCAGAAGGAGAAGGAGGTGCAGAGTTTTGATTCTCTACTTCTTGTTTTGAAACAAGGAAGCTGTGAATCGAAGATTGCATCGGTCAGGGTTTTGAAATCCATAGCGGTAGACACAGAATCGAAGCTTCTAATAGCGGAAAAAGAAGGTTTAGCAACAGAATTGCTCAATCTAATCACGCCGGAGAAAGATCCAAACCTAACCGAGAACGCACTTTCGTGTCTAGTGGCTATCTCAACGCCGAAACGGAACAAATTGAAACTGATTCATCTCGGAGCAGTGAAGGTATTCTCGAACCTTCTAACGTCTCGAACTAATTTATGCGTTTCGGTGACGGAAAAGGTACTGAAACTTCTCGAAACGGTGTCATCAACGAAGGAAGGGAGATCGGAGATATGTGAAGAACCGTCGTGCGTGGCGGCGATAGTGAACAAGGTTTTAAAAGTATCCACCGTGGCAACGGAGCATGCAGTTACGATACTGTGGAGTGTGTGTTATTTGTTTCGTGATCAAAAAGCACAAGAAGCAGTTACGAAAGCTAACGGATTGACGAAGATTTTGCTTCTGATGCAGAGCAATTGCACGCCACAAGTTCGTCAAATGTCTGTAGATTTACTTAAGATTTTTCGTGTTAATTCTAAGTCGTGTCTTTCTTCGTATGATACTAAAACCACTCATATTATGCCATTTTGA 1164 0.4201 MVRDDLYITVPSLFRCPISLDVMKSPILQTKDFVPNRTLQRLIQIWSDSVRHRVDSNESMISNESVDKRDQLLVAITDLESGSENRFESLEKIVRFAKDSEENSVFLAKTEGFVALLVGFLDNVDGGVELSVELLEQVVVALDLVLSKIENRDSILKSQKEKEVQSFDSLLLVLKQGSCESKIASVRVLKSIAVDTESKLLIAEKEGLATELLNLITPEKDPNLTENALSCLVAISTPKRNKLKLIHLGAVKVFSNLLTSRTNLCVSVTEKVLKLLETVSSTKEGRSEICEEPSCVAAIVNKVLKVSTVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05118 387 PANTHER WDSAM1 PROTEIN 31 375 IPR045185 GO:0061630
Trre8g05118 387 SUPERFAMILY RING/U-box 5 48 - -
Trre8g05118 387 Gene3D - 69 376 IPR011989 -
Trre8g05118 387 SUPERFAMILY ARM repeat 80 369 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05118 Trre-Chr8 53714937 53716190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05118 1 387 U-box Gene Family AT5G64660 48.478 6.48e-115 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05118 - - cam:101496984 601.282