Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05117 ATGGCGAGACCTTTTGAGATGATCAAAGACATCAACGATTCAAAATCTGTGTGGAAACTTGCTGTTCTTGTCAGGGATTTATGGACTGTTAGTAACTCTAACAAACGTCAGCATATCGAAATGGTCATCGTTGATAAACAGGGTAACGATATTCAAGTTATTGTTCCGTTTGATCTTGTCGAACATTTCAAGGAAAAACTGGCTGAAAATACATCATTTACACTTTACAACTTTGAGGTTGAAAAAAATAATGTTACTTTGAAATGTTCACCTCATCCTTTCAAGCTGGTCTTCAACTCTTGTACTGTGATTGACCACATAAATGGTCACGAAATTCCTAACTCTGGGTACAAGTTTGCTGATTTTGCTGAACTTAAGGCAGGAAAATATCGTCCTGATGTTGTTGTAGATATCATTGGAGTTTTTGAAGAACTAGGCTATACGCAAACTGTTCCTGGAAATAGGAAGGTTCAAGTTAACTTTACTCTTAAAGATAACAGGGGAGAGACACTTAAATGTACTTTATGGGAAGACTTTGCACTACAATTCCAGAATTATAACTCCCAAAGAACTGATTGGGGTCATACCATCATTGTCATTCACAATGGAAAGATCAAAGAAGCCACTGAAAAGTATGAGTTGGGTGTATCCAATGCTTGGAATGCAACCAAACTCTTCATTAATGATGACATTCCTCCAATCAATGAATTTAAAGCAAGCTTGCCTCACGATCAACCAGGTTCATCGCAAAGTCTAAGCTTGACATGTCGCTCCCAGATTTTAACCCAATCATCTACGACTTCCTTTGTCAGTGCTCCAGAAAAGTTCCTCCAAAAAGCTACTGCTCTCCCAATTCAAGATATTGTTAACCTCACTGAGGTAACTGTTTGTGCAACTGTTGGTAAATGTATCAAGCTGATCCCAAATCCAAAAGGCTGGTACTATAAAGCCTGTGGGAAATGTAATAAAGTGGCAAAAGGAGACACATTGCCTTTGGTGTGTCCAGATGGCCATGAGACTCATGCCATCAATTTGAGGTACAAACTTGAATATGAGGTCGAGTTTAACAAAGCAACTGCAAAATTTATTTTCTGGGATCGTGAATGTAATGAGTTGCTTGGGAAAACTGCTGCTGATCTTCATGCTATTATGGTTGAGGCTGGTGTCACTAATCCACTTGAACAACCTCTCTGCCTGGACAATATATGTGGTCGAGCTTTTGCGTTTAGAGCTAAGTGGCAACCTTTATGGGAGACATTATCCGTTCAAGCAGTCAAAGAAGATGCTGCTTTCATCAATAAGATCACAGACCTTTTCCCTATAAATGAGGAAACTTCAAAGGTTGTTCCCGCTTTAACATCTCAGTCTGCTGAGATTGAGCCATTGGATTCTATGGATGATGTTCCTTCTCTTGATGCTATTCCATCTCAACCTATTGAGCTTATCAATTCCATTGCATCCTTTGATGTTGGCCTTAACTCTGTTGAAAACAATACCCCAACTTCCAAATGTTCAACGCAAGCCACTTCTGCTTCTTCAACCTATGATCCAGATGCTGTTGACGCCAGCACACCATCCAAAGTCAGCTCTATCACCCCATCCAAAGATAAAAGAACTGCTACTGCTGCCCTTAATGTTGAAGGTGCAGATTATCCTACTCAGCTTTCTTCAACCAGACCCAAGAGGAACATCATCAAGCTTGAAAAAAAATGA 1713 0.3981 MARPFEMIKDINDSKSVWKLAVLVRDLWTVSNSNKRQHIEMVIVDKQGNDIQVIVPFDLVEHFKEKLAENTSFTLYNFEVEKNNVTLKCSPHPFKLVFNSCTVIDHINGHEIPNSGYKFADFAELKAGKYRPDVVVDIIGVFEELGYTQTVPGNRKVQVNFTLKDNRGETLKCTLWEDFALQFQNYNSQRTDWGHTIIVIHNGKIKEATEKYELGVSNAWNATKLFINDDIPPINEFKASLPHDQPGSSQSLSLTCRSQILTQSSTTSFVSAPEKFLQKATALPIQDIVNLTEVTVCATVGKCIKLIPNPKGWYYKACGKCNKVAKGDTLPLVCPDGHETHAINLRYKLEYEVEFNKATAKFIFWDRECNELLGKTAADLHAIMVEAGVTNPLEQPLCLDNICGRAFAFRAKWQPLWETLSVQAVKEDAAFINKITDLFPINEETSKVVPALTSQSAEIEPLDSMDDVPSLDAIPSQPIELINSIASFDVGLNSVENNTPTSKCSTQATSASSTYDPDAVDASTPSKVSSITPSKDKRTATAALNVEGADYPTQLSSTRPKRNIIKLEKK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05117 570 MobiDBLite consensus disorder prediction 498 539 - -
Trre8g05117 570 Gene3D - 4 109 IPR012340 -
Trre8g05117 570 SUPERFAMILY Nucleic acid-binding proteins 4 105 IPR012340 -
Trre8g05117 570 Gene3D - 110 247 IPR012340 -
Trre8g05117 570 SUPERFAMILY Nucleic acid-binding proteins 304 413 IPR012340 -
Trre8g05117 570 CDD RPA1_DBD_B_like 137 242 - -
Trre8g05117 570 Pfam Domain of unknown function DUF223 40 125 IPR003871 -
Trre8g05117 570 Gene3D - 266 436 IPR012340 -
Trre8g05117 570 PANTHER OS03G0429900 PROTEIN 7 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre8g05117 570 SUPERFAMILY Nucleic acid-binding proteins 117 244 IPR012340 -
Trre8g05117 570 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05117 Trre-Chr8 53700108 53702908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05117 1 397 Core DNA Replication Machinery Family AT5G08020 20.000 6.55e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05117 - - tpra:123891620 490.73