Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05111 ATGAATATAATGGATTATGAGCAATTTGATTACTCATTTATCCCTCCTTACATGAATCAGCTGCATGAGTGTAGCTTAGAAAATGCATCTACATTCCAAACAGAAGATCTGTTATCTCCTAATACAATCTTAGATGAAATATTATTTGATCAAGATCAATTAGAAGATCTCTTATCTCCAAATACCATCCTAAACGAAATTTTCGATCAGGATGAGTCCATGGAAGGATTGCTGCAGCAACACACAAACCATGAATTTGATAACATAAACCACGACCAGACAATGCCTCTAGCGAATGAATCGTGTCATCAAGTTACCGAGAAAGGCTGCAAAAATGATGATTCTTATTGGAAGGTAGTTCAAGAAGAGTTAATGGAAGAGACAAGTTTAGTTGATCTCTTGCTGATAGGAGCTGAAGCTGTTGAATCACAGAACATGACTCTTGCTTATGAAATAATCGAAAAACTAAACAATGCCTCGTTAGAAAAAGGCGATAGTTTATTGAACAGGCTGTGTCCTTTCTTTACTCAAGGTTTGTATTATAAAACTACAAATGCTGCTGAATTCCACAGTGATCATGTTTCTACACAGACAAACACATTCTGTGTTTTTCAGATACTTCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTCACAGCAAACCAAGCAATTTTAGAAGCTACGGACGGTGCTGAGCAAGTTCATGTCATTGATTTTGATATCATGGAGGGAATCCAATGGCCACCATTGATGGTTGACTTTGCAATGAGAAAAAACACTACTTCCCTTAGAGTAACAGCAATCACAGTGGATCAGCAAAGTGCAGCCTCAGTTCAACAAACAGGAAGAAGGCTCAAAGAGTTCGCAGATTCAATCAATTTTCCATTCGTGTTCGATACGATGATGATGGTGAGTGAAGAAGATTTACAAGGAATTGAACTTGGTGGCACACTTATTGTCAACTGTATGATACATCAGTGGATGCCAAACAGAAGTTTCTCACTGGTCAAAACTTTTCTTAATGGTGTAAGAAAATTATCGCCCCGGCTTTTTGTTTTAGTAGAAGAAGAACTGTTTAATTTTTCAAGACTCAAATCTATGTCTTTTGTGGAGTTTTTCTGTGAAGCTTTGCATCACTATATAGCAGTTTCTGATTCACTTGTTAGTACTCTTTGGAGTAGTCATAAGATGGAGTTAAATCTTATAGTGAAAGAGGTTTTGGGAAATAGAATTTTAGACAGTGTAAGACAGTTTCCTTGTGAAAGAGAGGAGAGAATATTGTGGGAAGAAAGGTTTTTTTATTCATTGAAAGGGTATAAACGTGTTGGTATGAGTACATGTAATATTTCACAGGCTAAGTTATTGGTTAGCTTGTTTGGTAAAGGGTATTGGGTACAATTTGAGAATTTTAGGTTGGCTTTGTGTTGGAAGTCAAGACCTTTGACTTCTGTTTCAATCTGGGTACCAACAGATTATATTATGAGTGACAAAGTCAAATAG 1503 0.3639 MNIMDYEQFDYSFIPPYMNQLHECSLENASTFQTEDLLSPNTILDEILFDQDQLEDLLSPNTILNEIFDQDESMEGLLQQHTNHEFDNINHDQTMPLANESCHQVTEKGCKNDDSYWKVVQEELMEETSLVDLLLIGAEAVESQNMTLAYEIIEKLNNASLEKGDSLLNRLCPFFTQGLYYKTTNAAEFHSDHVSTQTNTFCVFQILQELSPYVKFAHFTANQAILEATDGAEQVHVIDFDIMEGIQWPPLMVDFAMRKNTTSLRVTAITVDQQSAASVQQTGRRLKEFADSINFPFVFDTMMMVSEEDLQGIELGGTLIVNCMIHQWMPNRSFSLVKTFLNGVRKLSPRLFVLVEEELFNFSRLKSMSFVEFFCEALHHYIAVSDSLVSTLWSSHKMELNLIVKEVLGNRILDSVRQFPCEREERILWEERFFYSLKGYKRVGMSTCNISQAKLLVSLFGKGYWVQFENFRLALCWKSRPLTSVSIWVPTDYIMSDKVK 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05111 500 ProSiteProfiles GRAS family profile. 121 489 IPR005202 -
Trre8g05111 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 112 485 IPR005202 -
Trre8g05111 500 Pfam GRAS domain family 130 488 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05111 Trre-Chr8 53634325 53635827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05111 130 488 GRAS Transcription Factor Family AT1G55580 33.333 2.21e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre8g05111 GRAS 2.5e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05111 - - lja:Lj0g3v0198459.1 687.567