Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05108 ATGTATGCTTCTACTTCCTTTACTTCACAACTCATCAATGATCTTCTTTTTGAATCCCACACAAGAAGATTACTCTTCCAAGACTCGGTTGTTCATCAATCACTAACCAACTCTCCTGTTTTAACAAACAACCATAATTCAACCGACTCGTATTTCGGAGCTCGTGAATTTGATTCAAATGTTGTGATGATACTTGCAGTCCTATTATGTGCTCTTATTTGCTCACTTGCATTAAACTCGACCATAAGGTGTGTCTTAAGATTTTTAAACGTAGCCATCAACAATGACGATTCTTCGAGTACAAGTAACAACTCATCACAAAAATTGGCCAGCAAAGGAATAAAAAAGAAAGCTCTCAAAACATTCCCAACGGTGAGCTATTCGACTGAGTTGAAACTACCTGGTTTGGATACAGAGTGTGTGATATGTATCTCAGAGTTTACAAAGGGTGAAAAAGTGCGCATTTTGCCTAAATGTAACCATAGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAAAACTCATCATGTCCTAAATGTAGACAATGTCTTCTTGAAATTTGTCAAAAGATTGTTGGGTCGCAGGTGCAAGCAGTTGTGTTGCCGGTACCAGAAACCATTATAAGGATCCAACCACTAGAGCATGAAGCTTTAGAACGTAATTACCTTCCTTAA 678 0.3791 MYASTSFTSQLINDLLFESHTRRLLFQDSVVHQSLTNSPVLTNNHNSTDSYFGAREFDSNVVMILAVLLCALICSLALNSTIRCVLRFLNVAINNDDSSSTSNNSSQKLASKGIKKKALKTFPTVSYSTELKLPGLDTECVICISEFTKGEKVRILPKCNHSFHVRCIDKWLKENSSCPKCRQCLLEICQKIVGSQVQAVVLPVPETIIRIQPLEHEALERNYLP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05108 225 Pfam Ring finger domain 139 182 IPR001841 -
Trre8g05108 225 SUPERFAMILY RING/U-box 118 188 - -
Trre8g05108 225 SMART ring_2 140 181 IPR001841 -
Trre8g05108 225 CDD RING-H2_EL5-like 139 182 - -
Trre8g05108 225 PANTHER RING-H2 FINGER PROTEIN ATL78 18 218 IPR044602 GO:0016567|GO:0016740
Trre8g05108 225 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Trre8g05108 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
Trre8g05108 225 FunFam RING-H2 finger protein ATL73 99 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05108 Trre-Chr8 53592594 53593271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05108 57 186 C3H Transcription Factor Family AT3G10910 54.135 1.77e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05108 K19040 - gmx:100780127 308.916