Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05106 ATGTATGCTTCTACTTCCTTTACTCCACCACTCCTCCATGAGCTTCTTGTGAAATCTCACACAAGAAGGTTACTCTTCCAAAACACAAATGAACATCAATCACTCAAAATCAACTCCCATGTTTTCACAAACAGTGGCGCCAATTCAACCGGCTCAAATTTTGATGCTCGTGAATTTGATTCAAATGTTGTGATGATAATTGCAAGCTTACTATGTTGTTTTATTTGCTTGCTTGCATTAAACTCCATCATAAGGTGTGCCTTAAGGTTTTCAAATTTAAACATCAACGATGACTCTTTTTCGAGTTCGAGTAGCAACCCTTCACCTCAATTAGTCAATAAAGGAATCAAGAAGAAAGTTCTCAAGAAATTTCCTACAATGAGCTATTCAACTGAGTTGAAACTACCGGGTTTGGATACAGAGTGTATGATATGTCTCTCAGAGTTCGCAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCACGTTCGTTGCATTGATAGATGGCTAAAGGAACACTCGTCATGTCCCAAGTGTAGACAATGCCTTCTTGAAACTTGTCGAAAGATTGGTGGGTCGCAGGTGCAACCAATTGTGTTGCCAGTTCCAGAAACCATTATAAGGATCCAACCACTAGAGCCTGGAGCTTTGGAGCATAATTATAGGGAACAAATATAA 690 0.3957 MYASTSFTPPLLHELLVKSHTRRLLFQNTNEHQSLKINSHVFTNSGANSTGSNFDAREFDSNVVMIIASLLCCFICLLALNSIIRCALRFSNLNINDDSFSSSSSNPSPQLVNKGIKKKVLKKFPTMSYSTELKLPGLDTECMICLSEFAKGEKVRILPKCNHGFHVRCIDRWLKEHSSCPKCRQCLLETCRKIGGSQVQPIVLPVPETIIRIQPLEPGALEHNYREQI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05106 229 SMART ring_2 142 183 IPR001841 -
Trre8g05106 229 PANTHER RING-H2 FINGER PROTEIN ATL78 16 218 IPR044602 GO:0016567|GO:0016740
Trre8g05106 229 FunFam RING-H2 finger protein ATL73 102 189 - -
Trre8g05106 229 Pfam Ring finger domain 141 184 IPR001841 -
Trre8g05106 229 CDD RING-H2_EL5-like 141 184 - -
Trre8g05106 229 SUPERFAMILY RING/U-box 120 189 - -
Trre8g05106 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 188 IPR013083 -
Trre8g05106 229 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05106 Trre-Chr8 53577203 53577892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05106 59 188 C3H Transcription Factor Family AT3G10910 51.128 6.09e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05106 K19040 - gmx:100780127 286.189