Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05105 ATGTATGCTTCTACTTCCATTTCTTCACCACTCTTAAATGAGATTCTTGTGGAATCTCACATAAGAAGGTTACTCTTCCAAGACCCAATTGATCATCAATCACTTAAAATCAACTCCCCAGTTTCAACAAACAGCCATAATTCAACAGACTCATATTTTGGAGCTCATGAATTTGATTCAAAAGTTGTGATGATACTTGCAGTCATTTTATGTGCTTTTATTTGCTCACTTGTATTAAACTCGGTCATAAGATGTGCCTTAAGGTTTTCAAATGTAGCCATCAATGGCGACTCTTCTTCGAACAGCAACCCTTTACCTCAAATTGTCAACAAAGGAATCAAGAAGAAAGTTCTTAAGAGATTCCCAACATTGAGCTATTCAAGTGAGTTGAAACTACCAAATTTGGATACAGAGTGTATGATATGTCTTTCAGAGTTCACAAAGGATGAAAAAGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCATGTTACTTGCATTGACAAATGGCTAAAAGAACACTCATCATGTCCCAAGTGTAGACAATGTCTTCGTGAAACTTGTCGAAAGACTGGTGGGTCGCAAGTGCAACCAATTTCGTTGCCAGTGCCAGAAACCATTATAAGGATCCAACCACTAGAGCATGAAGATTTAGAACGTAACTATAGAGACATATAA 678 0.3732 MYASTSISSPLLNEILVESHIRRLLFQDPIDHQSLKINSPVSTNSHNSTDSYFGAHEFDSKVVMILAVILCAFICSLVLNSVIRCALRFSNVAINGDSSSNSNPLPQIVNKGIKKKVLKRFPTLSYSSELKLPNLDTECMICLSEFTKDEKVRILPKCNHGFHVTCIDKWLKEHSSCPKCRQCLRETCRKTGGSQVQPISLPVPETIIRIQPLEHEDLERNYRDI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05105 225 CDD RING-H2_EL5-like 138 181 - -
Trre8g05105 225 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Trre8g05105 225 Pfam Ring finger domain 138 181 IPR001841 -
Trre8g05105 225 PANTHER RING-H2 FINGER PROTEIN ATL78 17 217 IPR044602 GO:0016567|GO:0016740
Trre8g05105 225 SUPERFAMILY RING/U-box 117 186 - -
Trre8g05105 225 FunFam RING-H2 finger protein ATL73 98 186 - -
Trre8g05105 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 186 IPR013083 -
Trre8g05105 225 SMART ring_2 139 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05105 Trre-Chr8 53563808 53564485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05105 36 184 C3H Transcription Factor Family AT3G10910 44.586 4.04e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05105 K19040 - gmx:100780127 304.679