Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05103 ATGTATGCTTCTACTTCCTTTACTTCACAACTCGTCCATGACTATGAGCTTCTTGTGGAATCTAACACAAGAAGGTTACTCTTTCAAGACCCGGTTGATCATCGATCACTAACCAACTCCCCTGTTTTAACAAACAACCATAATTCAACAGACTCGTATTTCGGAATTCGCAAATTTGATGCAAATGTTGTGATGATACTAGGAGTCCTATTGTGTGCTCTTATTTGCTCACTTGCATTAAACTCCATCATAAGATGTGTTTTAAGGTTTTTAAATGTAGCCATCAACAATGATTCTTCTTTGAGTTCGAGTAGCAACTCTTCACCTCAATTGGCCAACAAAGGAATCAAGAAAAAAGCTCTCAAGACATTTCCCACAGTGAGCTACTCAACTGAGTTAAAACTACCAAGTTTGGATGCAGAGTGTGTGATATGTCTCTCAGAATTCACAAAGGGTGAAAAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGGTCGGAAGCACCATCTATGTTGCCAGTGCCGGAAACTATTATTAGGATTCAACCACTAGACCATGAAGTTTTTGAACGTGACTATAGGGAAGAAAGCAGATAA 597 0.3936 MYASTSFTSQLVHDYELLVESNTRRLLFQDPVDHRSLTNSPVLTNNHNSTDSYFGIRKFDANVVMILGVLLCALICSLALNSIIRCVLRFLNVAINNDSSLSSSSNSSPQLANKGIKKKALKTFPTVSYSTELKLPSLDAECVICLSEFTKGEKCLLETCRKIVGSEAPSMLPVPETIIRIQPLDHEVFERDYREESR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05103 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 168 IPR013083 -
Trre8g05103 198 PANTHER RING-H2 FINGER PROTEIN ATL78 20 160 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05103 Trre-Chr8 53558717 53559407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05103 59 154 C3H Transcription Factor Family AT3G10910 45.000 2.21e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05103 K19040 - gmx:100780127 241.121