Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05102 ATGTATGCTTCTACTTCCTTTACTTCACAACTTGTCCATGAGCTTCTTGTTGAATCCCACACAAGAAGGTTACTCTTCCAAAGCCCAATTGATCATCAATCACTAACCAATTCCCCTATTCTAACACAGAACCATAATTCAACCAATTCATATTTCGGAATTCGTGAATTTGATACAAATGTTGTGATGATACTAGCAGTCCTATTGTGTGCACTTATTTGCTCACTTGCGTTGAACTCTATCATAAGGTGTGCCTTAAGGTTTTCAAACGTAACTGTCAACAACGACTCTTCTTCGAGTTCGAGTGCCAATTCTTCACCTCAGTTGGTCAACAAAGGAATCAGGAAGAAAGCTCTCAAGACATTTACCACAGTGAGCTACTCAACTGAGTTGAAACTACCAAGTCTGGACACGGAGTGTATGATATGTCTCTCAGAATTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCACGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGCACACTCATCATGCCCCAAGTGCAGACAGTGTCTCCTTGAGACTTGTCGAAAGATTGTTGAGTCGGAAGCACCACCTATGTTATCAGTGCCAGAAACTATTATTAGGATTCAGCCACTAGTCGCTGAAGCTTTTGTACGTAACTATAGGGAAGCAAGCTGA 681 0.4141 MYASTSFTSQLVHELLVESHTRRLLFQSPIDHQSLTNSPILTQNHNSTNSYFGIREFDTNVVMILAVLLCALICSLALNSIIRCALRFSNVTVNNDSSSSSSANSSPQLVNKGIRKKALKTFTTVSYSTELKLPSLDTECMICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVESEAPPMLSVPETIIRIQPLVAEAFVRNYREAS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05102 226 SUPERFAMILY RING/U-box 120 187 - -
Trre8g05102 226 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Trre8g05102 226 FunFam RING-H2 finger protein ATL73 98 187 - -
Trre8g05102 226 PANTHER RING-H2 FINGER PROTEIN ATL78 16 216 IPR044602 GO:0016567|GO:0016740
Trre8g05102 226 CDD RING-H2_EL5-like 139 182 - -
Trre8g05102 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
Trre8g05102 226 SMART ring_2 140 181 IPR001841 -
Trre8g05102 226 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05102 Trre-Chr8 53555492 53556172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05102 53 186 C3H Transcription Factor Family AT3G10910 51.799 1.40e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05102 K19040 - gmx:100780127 300.441