Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05093 ATGGCGAAATCATATGAAACCGAACTTCCACTGAAAGCTTTTGGTTGGGCTGCTTCAGATACCTCTGCCACCCTTTCTCCCTTCAATTTCTCTAGAAGAGAAAATGGCGATGATGATGTTACTCTCAAAATCCTTTTCTGTGGTGTTTGTCATTCTGATCTACACACTATCAAGAACGATTGGGGTTTCACTACTTACCCTGTTGTTCCAGGCCATGAAATTGTTGGCGAGGTGACAAAAATTGGAAACAATGTGAAAAATTTCAAAGTGGGGGATAAGGTTGGTGTTGGTGTGATGGTGGAGTCTTGTCAGACTTGTGAGAATTGCCAGCAGGATCTAGAGAATTACTGTCCTAAACTTGTATTCACTTATAACTCTCCTTATAAAGGGACACGAACCTATGGCGGCTATTCTGATTTCGTGGTTGTTCACCAGCGGTATGTACTCCAGTTTCCTGCCAACTTACCCCTTGCTGCTGGTGCTCCACTACTGTGTGCCGGGATCACTGTGTATAGCCCGATGATATATTATGGGATGACTGAGCCGAGAAAACATTTGGGAGTGGCAGGACTTGGTGGGTTAGGCCATGTTGCAATCAAATTTGGTAAAGCATTTGGGCTGAAGGTTACTGTCATTAGTACCTCTCCAAACAAGAAAAGTGAGGCCATTGACAAACTTGGTGCTGATTCTTTCATTGTTTCCAATGACCCTGAACAAATGAAGGCTGCTACTGGAACCATAGACTATATCATAGACACAATTTCTGCTGATCATTCCGTGTTGCCACTGCTTGCACTACTGAAGCTGAATGGGAAGCTGGTCACTGTAGGGTTGCCAAGCAAGCCTCTTGAGCTCCCTGTCTTTCCGTTAGTTGGAGGGAGGAAGCTTATAGGGGGGAGCAACTTTGGCGGCATAAAGGAGACTCAGGAGATGCTCAATTTCTGCGCAAAGCATAACATAACTGCGGATATTGAGCTGATTAAGATGGACCAAATCAACACAGCAATGGAAAGGCTTAGCAAAGCTGATGTGAAATATCGCTTTGTGATTGATGTGGCCAACTCTTTCTCAAGTTTGTAG 1080 0.4435 MAKSYETELPLKAFGWAASDTSATLSPFNFSRRENGDDDVTLKILFCGVCHSDLHTIKNDWGFTTYPVVPGHEIVGEVTKIGNNVKNFKVGDKVGVGVMVESCQTCENCQQDLENYCPKLVFTYNSPYKGTRTYGGYSDFVVVHQRYVLQFPANLPLAAGAPLLCAGITVYSPMIYYGMTEPRKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKKSEAIDKLGADSFIVSNDPEQMKAATGTIDYIIDTISADHSVLPLLALLKLNGKLVTVGLPSKPLELPVFPLVGGRKLIGGSNFGGIKETQEMLNFCAKHNITADIELIKMDQINTAMERLSKADVKYRFVIDVANSFSSL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05093 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Trre8g05093 359 Gene3D - 166 322 - -
Trre8g05093 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 320 IPR036291 -
Trre8g05093 359 SMART PKS_ER_names_mod 20 350 IPR020843 GO:0016491
Trre8g05093 359 SUPERFAMILY GroES-like 23 182 IPR011032 -
Trre8g05093 359 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Trre8g05093 359 Gene3D - 16 352 - -
Trre8g05093 359 FunFam probable cinnamyl alcohol dehydrogenase 16 180 - -
Trre8g05093 359 CDD CAD1 14 351 IPR047109 GO:0016616
Trre8g05093 359 PANTHER ALDEHYDE REDUCTASE 6 355 IPR047109 GO:0016616
Trre8g05093 359 FunFam Putative cinnamyl alcohol dehydrogenase 6 323 352 - -
Trre8g05093 359 FunFam Cinnamyl alcohol dehydrogenase 166 322 - -
Trre8g05093 359 Pfam Zinc-binding dehydrogenase 193 316 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05093 Trre-Chr8 53495433 53498305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05093 12 356 Monolignol Biosynthesis Gene Families AT2G21730 69.540 1.37e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05093 K00083 - gmx:100819684 580.867