Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05088 ATGGATTTCGACGAGTACGAGTACTTGGAGAAGACGGTGGAGGAGCTACCGGAAGACAAAGATTCATCCAAAAAGAAGAAGTCCAACAGCGCCGACATTAAATCCGATAGAACTTACCGGAAACGCGACGTCGACGACGATCTGGACGGAGAAGATAGACGGAGCAAGAGGTCACGCGGAGACGACGAGAATGGCTCTAAAAAGGATCGCGATAGAGATAGAGACCGTGAACGCGACCGTGACCGTGACCGTGAGAGATCTTCCGGCCGGCATAGAGAGAGGGAGAGAGACGGAGAGAGAGGTAGCAGAGAGAAAGAGAGGGAGAAGGATGGAGAGAGAGGTGGCAGAGACAAAGAGAGAGATAAGGAGAGGGATAAAGAGAGAGAAAAGGAGAGGGAGAGAAGAGATAAGGAAAGGGAAAAGGAACGGGAGAGAAGAGAGAAAGAGAGAGAGAAGGAACGAGAGAGAGAAAAGGAGGAGAAAGAGAGACCAAGGAGGAGTATGAGTCGTCCTGAGAGAGATAGAGGAGAAAGAGTTGAGAGAGAAAGAGATTTTGAAAATAGAGATGGCAGGAGATTCAGGGATAAGAAAGACAATGCGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCTCTAAAAGCAACAGAGAGAGATGTATACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCCGGACAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCGGAAAAAAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACCGAGGCAAATCTCCGAGAGATTTTTGAGCCATTTGGTCAGATTGAAGTTGTACAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGCTTTGTTCAATTTGCTCATCTCGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTAGAGATTGCTGGCAGGACTATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGACTTTAAATGCCCACTCGAGGGCATTGCTTATGCAAAGGTTGGCTGGTGCTGACGTTCCCACAAGCATTGGTGTACCAAATGTGAATGGGTCGGTTCCTGTTCAGCAGCCTTTTAGCTTTCCTATTGGCAATCCAGGTGTTATACCCGCACCAGGTCTACCAACACAAGTTATGCCTACTCCCGTGGTAGAACCAGTAGGAATCCCCAGCGAGTGTTTATTATTGAAGAATATGTTTGATCCAAACACCGAGACGGAACCAGATTTTGATATTGACATTAAAGAGGATGTAGAGGAAGAGTGTTCGAAATACGGACGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTACTTACAGTTTGAAACAGTGGAAGCATCAAGTGCAGCACAACGAGCAATGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCTATCTACATGGAACCACATTTATATGAAGCCAAGTTTAAGGGGGAATTGTGA 1734 0.4556 MDFDEYEYLEKTVEELPEDKDSSKKKKSNSADIKSDRTYRKRDVDDDLDGEDRRSKRSRGDDENGSKKDRDRDRDRERDRDRDRERSSGRHRERERDGERGSREKEREKDGERGGRDKERDKERDKEREKERERRDKEREKERERREKEREKEREREKEEKERPRRSMSRPERDRGERVERERDFENRDGRRFRDKKDNAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADVPTSIGVPNVNGSVPVQQPFSFPIGNPGVIPAPGLPTQVMPTPVVEPVGIPSECLLLKNMFDPNTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEASSAAQRAMHMRWFARRLITAIYMEPHLYEAKFKGEL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05088 577 NCBIfam splicing factor, CC1-like family 102 573 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre8g05088 577 SMART rrm1_1 314 387 IPR000504 GO:0003723
Trre8g05088 577 SMART rrm1_1 212 284 IPR000504 GO:0003723
Trre8g05088 577 SMART rrm1_1 484 561 IPR000504 GO:0003723
Trre8g05088 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Trre8g05088 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 280 IPR000504 GO:0003723
Trre8g05088 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 559 IPR000504 GO:0003723
Trre8g05088 577 Coils Coil 116 163 - -
Trre8g05088 577 SUPERFAMILY RNA-binding domain, RBD 313 564 IPR035979 GO:0003676
Trre8g05088 577 SUPERFAMILY RNA-binding domain, RBD 203 296 IPR035979 GO:0003676
Trre8g05088 577 Gene3D - 478 576 IPR012677 -
Trre8g05088 577 Gene3D - 309 405 IPR012677 -
Trre8g05088 577 MobiDBLite consensus disorder prediction 1 211 - -
Trre8g05088 577 CDD RRM1_RBM39_like 212 284 - -
Trre8g05088 577 Gene3D - 204 298 IPR012677 -
Trre8g05088 577 CDD RRM3_RBM39_like 482 564 - -
Trre8g05088 577 MobiDBLite consensus disorder prediction 13 210 - -
Trre8g05088 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Trre8g05088 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Trre8g05088 577 FunFam RNA-binding protein 39 isoform X1 204 296 - -
Trre8g05088 577 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 501 IPR029123 -
Trre8g05088 577 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 573 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre8g05088 577 FunFam Splicing factor CC1-like 297 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05088 Trre-Chr8 53451026 53456644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05088 285 386 Eukaryotic Initiation Factors Gene Family AT4G34110 31.068 2.22e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05088 K13091 - gmx:100793461 685.256