Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05084 ATGCCAATGATGTTTCCTGGTTTTCATAGAGAAGGAGAAATGTCAGCTATGGTTTCTGCTTTAACACATGTTATATGTGGTGATCAGAACAATGATGATTTTAGTGTTCTGAATCAGAATATGAATCACACTGCATTTCATCAAGGAGATGGTAACCCTTTTGTTTCTGCAACAACATCTTCAACTTCTTTATCTTATGGTGATAGTTCTTCTCTCAAAAGAAGAAGGGAAGATGGTGGATTCTTTCACAATTCTTCCTCTGCCTTTCCCCCAAATAAGCACCAAGAATGTTCAAGCAACAGGACAAACACAAAAACAACAGAAAGGAATCAAATATCAGAACCTATATATGAATACAGAACAGATAATAACAATGTGAAAAATGAAGAGCAACCAAAAAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCTACAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCTAAAGCATATGATCAAGCTGCATTGCGTTTTAGAGGCAATAAAGCAAAACTCAACTTTCCTGAAAATGTTAGGCTCAAGCAACAACCTTTGGTTAATCCAACACCAACCCATTTGAATATTTCACATTCTAATAGTGCCCTTTTGTCATCTCAATCTAGCATTGATCCTACAGTTTATGGTCAAAACTTCCCTATGAGATTATATGATCAGATTACTATGTCATCATCTAATGACATGGCTTCACTTCAAACTTCAATGTCACCATCAGCTTCATATTCTTCTAATACTACTACTATTGCTTCTTCTTTTAGTTCTCCACAGACAGCTTCTTCGATTCCTTCGGTTTATACTACCGATTTGCCACCATGGTCTTCTGGTTTTAATTCATCTCCCTCAGGCTAA 918 0.3715 MPMMFPGFHREGEMSAMVSALTHVICGDQNNDDFSVLNQNMNHTAFHQGDGNPFVSATTSSTSLSYGDSSSLKRRREDGGFFHNSSSAFPPNKHQECSSNRTNTKTTERNQISEPIYEYRTDNNNVKNEEQPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQAALRFRGNKAKLNFPENVRLKQQPLVNPTPTHLNISHSNSALLSSQSSIDPTVYGQNFPMRLYDQITMSSSNDMASLQTSMSPSASYSSNTTTIASSFSSPQTASSIPSVYTTDLPPWSSGFNSSPSG 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05084 305 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
Trre8g05084 305 MobiDBLite consensus disorder prediction 251 305 - -
Trre8g05084 305 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Trre8g05084 305 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Trre8g05084 305 MobiDBLite consensus disorder prediction 48 137 - -
Trre8g05084 305 MobiDBLite consensus disorder prediction 85 122 - -
Trre8g05084 305 FunFam Ethylene-responsive transcription factor 2 134 193 - -
Trre8g05084 305 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Trre8g05084 305 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Trre8g05084 305 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Trre8g05084 305 Pfam AP2 domain 135 184 IPR001471 GO:0003700|GO:0006355
Trre8g05084 305 Gene3D AP2/ERF domain 134 194 IPR036955 GO:0003700|GO:0006355
Trre8g05084 305 MobiDBLite consensus disorder prediction 123 137 - -
Trre8g05084 305 PANTHER DNA-BINDING DOMAIN 99 259 IPR044808 GO:0003700|GO:0009873
Trre8g05084 305 MobiDBLite consensus disorder prediction 48 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05084 Trre-Chr8 53428992 53430272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05084 128 209 AP2-EREBP Transcription Factor Family AT5G13330 69.880 8.28e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g05084 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05084 - - tpra:123913316 497.664