LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g05074	ATGGGATGTGTCAGTAGCAAGACTCCCCCTCGAAACATAAACCGAAACCGGAGTCGCCATGTTGATAGGTTGAAAGATCAGTATGCAAACAGTGATTCTGCACTCAAACCAATTATCACCCATAACAAGACTTATTCATCTAAACACTCAGAAGTGGAGAGTAAGAAGAGAGCTCTGACTGTGAAGACTACTACTTCAAGTGAGAATCTTAGCGGAGGAGGAAGAGGAGAAGAAAGGGACGACAAGAAGATAAAGGGTGTTGCTAGAGATCTTGATGATGATAATAAGTCTGAAGAAGAGGATGAGGAGAATAAGAACAATAATATTGCAAGTCATGAAGTTAAAGTGGGAGATGGTGAGTGGCCCAAATGGCTGGTTGATAATATCCCTGAAAACGTTTTGGCTACTTTGATTCGAAAGACTGCTGATTCCTATGAGAAACTAGGAAAGGTAGGACGTGGAACATATAGTAATGTATATAAAGCCAGGGATAAGGACACCGGAAAGATTGTTGCTTTAAAGAAGGTAAGATTTGATACTTCGGATTCTGAAAGTATCAAGTTTATGGCAAGAGAGATTATGATAATACAAACGCTGGATCATCCCAATGTCATCAAACTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATTTAGTCTTTGAAAACATGCAATGTGACCTTACTAGAGTTATATCTCGCCCCGGTGAAAGACTCACCGAACCACAGATAAAATGTTACATGCAGCAGCTACTTTTGGGACTACAACATTGTCATGAGAGGGGAGTTATGCACAGAGATATTAAAGCTTCTAATTTGTTAATAGATAAAAAAGGGGCGTTAAAAATTGCTGATTTTGGGCTTGCAAATTCTTTAAAAATTAAACCTAAAGGACCTCTTACAAATAGAGTTGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACAGATTATGATTATAGCATTGATATATGGAGTATAGGTTGCTTATTGGGTGAGATGTTTGTTGGAAGACCAATTTTGCCTGGAAGGACAGAGATTGAACAGATTCATATGATATACAAACTTTGTGGTTCACTTCCTGAGGACTACTTGACAAAAATGAAGCTAAAGACAAGCTTCCGTCCACCACATCGTTATAAAGCTAGTTTTGAAGAAAATTTTAAGGATTTCCCTTCATCTGCCCTTAATCTCTTGACTACACTTCTTGATCTAGACCCCCAACTTCGTGGTACTGCTGCCTCTGCCCTTGAAAGTCAATTCTTCAAATCTCGTCCATTAGCATGCGACATTTCAGAATTACCGGTAATAATCAACAAAGGTGATGATGAACGACCTCAAAATAAGAGACGCAAAAGGCGCAAGGGTTTGAAAAAAGGGCAACTATCTAAAAGAAGTGCAAGCCATTCAAACCTGTCAGGAATGAACCAAACTGTTGAACAATTCAAGACAGATTCAGAAGCATCAAAGGAGGAGAAGAGTAGAGGACAAAACATGCTAGGACCAGAGACAGGGAATAGTGGAAGCAGCAGCAAATCATCATCAATATTTACTAGCGAAAGGAGCATGAATGCGTCTATATCCCCAGTTTTTCTCTCTAGCAGGAAAATATCCCCCAAAACTGAAGGCCATCCTAATGCTCTTAAGAATATAAAGAACTACACACTCTTACAAGCATCTATACTTGATATGATCAACCCCAAAGAAGGCAATGATTTTGGTCAGTTTCGTAGGTCTTTCTCCACGTTGGATTTTCGGCTTGATCCAGAGAAGCTGTCAAGTCTCTACGGAGCAAGTAGTAAGTTGGACAAGGAAGTTTGA	1836	0.3943	MGCVSSKTPPRNINRNRSRHVDRLKDQYANSDSALKPIITHNKTYSSKHSEVESKKRALTVKTTTSSENLSGGGRGEERDDKKIKGVARDLDDDNKSEEEDEENKNNNIASHEVKVGDGEWPKWLVDNIPENVLATLIRKTADSYEKLGKVGRGTYSNVYKARDKDTGKIVALKKVRFDTSDSESIKFMAREIMIIQTLDHPNVIKLEGLATSRMQYSLYLVFENMQCDLTRVISRPGERLTEPQIKCYMQQLLLGLQHCHERGVMHRDIKASNLLIDKKGALKIADFGLANSLKIKPKGPLTNRVVTLWYRAPELLLGSTDYDYSIDIWSIGCLLGEMFVGRPILPGRTEIEQIHMIYKLCGSLPEDYLTKMKLKTSFRPPHRYKASFEENFKDFPSSALNLLTTLLDLDPQLRGTAASALESQFFKSRPLACDISELPVIINKGDDERPQNKRRKRRKGLKKGQLSKRSASHSNLSGMNQTVEQFKTDSEASKEEKSRGQNMLGPETGNSGSSSKSSSIFTSERSMNASISPVFLSSRKISPKTEGHPNALKNIKNYTLLQASILDMINPKEGNDFGQFRRSFSTLDFRLDPEKLSSLYGASSKLDKEV	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g05074	611	MobiDBLite	consensus disorder prediction	1	113	-	-
	Trre8g05074	611	SMART	serkin_6	145	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre8g05074	611	Gene3D	Transferase(Phosphotransferase) domain 1	228	466	-	-
	Trre8g05074	611	MobiDBLite	consensus disorder prediction	445	525	-	-
	Trre8g05074	611	PANTHER	CELL DIVISION PROTEIN KINASE	143	432	-	-
	Trre8g05074	611	Pfam	Protein kinase domain	145	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre8g05074	611	MobiDBLite	consensus disorder prediction	15	29	-	-
	Trre8g05074	611	FunFam	probable serine/threonine-protein kinase At1g54610	132	227	-	-
	Trre8g05074	611	FunFam	Putative serine/threonine-protein kinase	228	466	-	-
	Trre8g05074	611	MobiDBLite	consensus disorder prediction	468	488	-	-
	Trre8g05074	611	Gene3D	Phosphorylase Kinase; domain 1	134	227	-	-
	Trre8g05074	611	ProSiteProfiles	Protein kinase domain profile.	145	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre8g05074	611	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	265	277	IPR008271	GO:0004672\|GO:0006468
	Trre8g05074	611	SUPERFAMILY	Protein kinase-like (PK-like)	139	432	IPR011009	-
	Trre8g05074	611	Coils	Coil	88	115	-	-
	Trre8g05074	611	MobiDBLite	consensus disorder prediction	504	525	-	-
	Trre8g05074	611	ProSitePatterns	Protein kinases ATP-binding region signature.	151	174	IPR017441	GO:0005524
	Trre8g05074	611	MobiDBLite	consensus disorder prediction	73	93	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g05074	Trre-Chr8	53366280	53370650	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g05074	140	482	Core Cell Cycle Gene Families	AT5G10270	43.407	3.24e-92	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Trre8g05074		Pkinase	1.7e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g05074	K08819		-	gmx:102667260	699.123