Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05065 ATGTCTCAAATAGTTAATAACAGCTTATATGAGGAGCAAAATCAAATTCCTACACAAATGGGGTTCATTCCTTTCGCAACAAACCTAACTTTCCCTTCTTTGGGTTGTAATAATCAATCTTTGAAAGCTTTAAGTTCCATAGCTTCTTCACTTACATCTGAATCAGCTGATTCTACATCAAATCTAACACAAACCCTACTCTCAAGTGCCAATCCTCAAAAATCATCAAGAGAATACCTCACTCCTAGCTTTGGAGGAACTCAATTCCTATCTTTGCATAGATCAAGTGTAAATCCATGGGCAATATTGGGAGGAGTAAGTGATTGCTTGAATACTACTAGTGGTAAAAGAAGTGGAGTAGATCATGATCATAAATTGGGGATTTCTAGCATGAAAATGAAGAAAATGAAGGGAAGAAAAAAGGTGAGAGAGCCTAGGTTTTGCTTCAAGACCTTAAGTACTGATGTGGATGTGTTGGATGATGGTTACAAATGGAGGAAGTATGGACAAAAAGTTGTGAAAAACACACAACACCCCAGAAGCTATTACCGTTGCACACAAGAGAATTGTCGTGTAAAGAAGCGAGTGGAGCGCTTGGCTGAGGATCCAAGGATGGTAATAACCACGTATGAAGGAAGACATGCACACACTCCATCAAATGATGATCTTCATGACTCTCAAACTCAATCTGATAATTTCTTATGGTAG 708 0.3842 MSQIVNNSLYEEQNQIPTQMGFIPFATNLTFPSLGCNNQSLKALSSIASSLTSESADSTSNLTQTLLSSANPQKSSREYLTPSFGGTQFLSLHRSSVNPWAILGGVSDCLNTTSGKRSGVDHDHKLGISSMKMKKMKGRKKVREPRFCFKTLSTDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHAHTPSNDDLHDSQTQSDNFLW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05065 235 FunFam WRKY transcription factor 57 144 219 - -
Trre8g05065 235 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 51 220 IPR044810 GO:0003700
Trre8g05065 235 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g05065 235 MobiDBLite consensus disorder prediction 211 235 - -
Trre8g05065 235 SUPERFAMILY WRKY DNA-binding domain 154 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g05065 235 Gene3D WRKY domain 145 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g05065 235 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g05065 235 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05065 Trre-Chr8 53311636 53314054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05065 128 235 WRKY Transcription Factor Family AT4G39410 75.439 1.60e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g05065 WRKY 5.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05065 - - pvu:PHAVU_002G266400g 293.123