Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05056 ATGGACTACTATTTTGTAAACCCTCATGCTACTCCCAATTTTTCTCAATCTACTCATCATAATATGATTCCTAATTCCTCTTCTCATCATGAGTTTATACAACAATTATCTGATTATCTCATGTTTGATGATATTTGTGTTGATCATCACCATGATCAAGAATCTCGAACACAAAGTACTAATGAATCATTAGAGAAGGTAACATCACAACGTACTGAATCATTTGAGAAGGTAACATTCAGTGATGCTAGTCAAGGATTCAATGATGCAACCTCTAAGAACAATAACATAAAAAACAAAAATGGGATTAAGCGAGAAGTGGGACCAAAGATAGCTTTTAGAACAAGATCAGAGATTGAGATTATGGATGATGGATACAAATGGAGGAAGTATGGAAAGAAGTCCGTGAAGAACAATCTAAACCTAAGGAACTACTACAAATGTTCAAGTGTTGGATGCAATGTGAAGAAAAGAGTGGAAAGAGATAGAGATGATTCGAGCTATGTGATAACAACTTATGAAGGTGTGCACAACCATGAGAGCCCATTTACCTCATATTGTAGTCAAATCTCCTTTGTGCATTCTGGTGCATAA 594 0.3535 MDYYFVNPHATPNFSQSTHHNMIPNSSSHHEFIQQLSDYLMFDDICVDHHHDQESRTQSTNESLEKVTSQRTESFEKVTFSDASQGFNDATSKNNNIKNKNGIKREVGPKIAFRTRSEIEIMDDGYKWRKYGKKSVKNNLNLRNYYKCSSVGCNVKKRVERDRDDSSYVITTYEGVHNHESPFTSYCSQISFVHSGA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05056 197 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 184 IPR044810 GO:0003700
Trre8g05056 197 SMART WRKY_cls 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g05056 197 Pfam WRKY DNA -binding domain 123 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g05056 197 SUPERFAMILY WRKY DNA-binding domain 114 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g05056 197 Gene3D WRKY domain 107 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g05056 197 FunFam WRKY transcription factor 57 108 182 - -
Trre8g05056 197 ProSiteProfiles WRKY domain profile. 117 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05056 Trre-Chr8 53220303 53222734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05056 6 190 WRKY Transcription Factor Family AT5G64810 44.737 1.90e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g05056 WRKY 6.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05056 - - tpra:123913985 320.087