Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05048 ATGGCACCGAAGAAGGAGAGAACACCTAGGATTACCAGAAACCCTGATTTGATTAGGGGAATTGGAAAGTTCTCAAAATCTCAGATGTACCACAAGAGAGGTATCTGGGCTATTAAGGCCAAAAACGGCGGCGTTTTACCTCGCCATGATCCTAAACCCAAACCCGAATCTCCTACTGAGAAACCACCCAAATTTTACCCTGCTGATGATGTGAAGAAACCTCTTCTCAACAAGCATAAGCCTAAGCCTACTAAGCTCAGGGCCAGCATTACTCCAGGGACAGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGCAAGAGGGTTGTGTTTTTGAAGCAGCTTCCATCTGGATTGCTTCTTGTAACTGGCCCATTCAAGATCAACGGAGTTCCTTTGAGACGTGTGAATCAGGCCTATGTGATTGGTACATCCACCAAAGTAGATATCTCTGGTGTTAATGTGGATAGCTTTGATGATAAGTACTTTTCAAAGGAAGCTCAGAAAAAGAAGACCAAGGGAGAAGGAGAATTCTTTGAGTCGGACAAGGAGGAGAAAAAGGTGTTGCCTCAGCAAAAGAAAGATGACCAGAAAACTGTGGATGCTGCATTGTTAAAATCCATTGAGAGTGTTCCAGACCTCAAGACTTATCTTGGTGCCAGGTTTTCTCTTAAGGCAGGCGTGAAGCCACACGAGCTAGTCTTTTAG 705 0.444 MAPKKERTPRITRNPDLIRGIGKFSKSQMYHKRGIWAIKAKNGGVLPRHDPKPKPESPTEKPPKFYPADDVKKPLLNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVNVDSFDDKYFSKEAQKKKTKGEGEFFESDKEEKKVLPQQKKDDQKTVDAALLKSIESVPDLKTYLGARFSLKAGVKPHELVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05048 234 MobiDBLite consensus disorder prediction 45 77 - -
Trre8g05048 234 FunFam 60S ribosomal protein L6 88 172 - -
Trre8g05048 234 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Trre8g05048 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Trre8g05048 234 PANTHER 60S RIBOSOMAL PROTEIN L6 5 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Trre8g05048 234 MobiDBLite consensus disorder prediction 173 193 - -
Trre8g05048 234 MobiDBLite consensus disorder prediction 41 86 - -
Trre8g05048 234 Gene3D - 88 172 IPR014722 -
Trre8g05048 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Trre8g05048 234 CDD KOW_RPL6 82 234 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05048 Trre-Chr8 53162364 53165088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05048 3 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 81.034 3.99e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05048 K02934 - gmx:100784101 409.068