Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05036 ATGGATGATTTTTTTGATGATATTGCTCCTATTGTTCCTACTACACGTGCTAGACCAGGTACAAGGTTTGCGCCGAAGGCGAAGGCGAAACCGAAACAATGGATTCAAAAGAATGTACCTGCATCATCAGAAAATTCAATTTCATCTAAAGATGGGAACAATGTGCTTGTTGATTCATCAACCACTCACAAAGAATCTGAAGGAATTTCTCAGAATGAATCTCATAATGTAGTTGCTGTAAGTTCCTCAATTGAAGAACCTATAAGGTCTGGTCATAATCCCGATATCGATGTCAATGACGTAACAGCACAACCAGTTCAGCCTGCTAATGCTGTAGAGAGTGTATTAAATAGTGTGGCTGCTCCATCTACTAATTGCGCAACCATAGGTAGGAACAAAGAATTGGCTGTAAATGGAGAAGGTTCATTTCTTGATAGCAATAAGAATTTGGAAGTTATTGATAATTCATTGGAAGTTAGCCTAAACGTGGGCTTCAAAAGTGCTTCAGGCGACAGTAACACTGGAATATCTGAGAGCAACATCCATTCAAATTTTGGGTTTGAAGAAGTGCCACAGGTCTTGTCTTCGGAATTTGAGTTTGATCCTTTCAGCGATGATGTCCTCCCTGATCCCAGGCCCGGCACTAGGAATGCCAAAAAGTTTCAACCCAAGATTAAGCCACGGCCTAGAGTCAGCAATACACCAGCTACTGCTTCTGCTTCATCCGGCATTCCATTCTCTGAAGACAATAGAAGCTTGGAAGCAGTTATTCCTTCTCATCCAGATTCCCTGAATGCTATGACATCAGAGGCTGTAGTCCATGATGGAACTAGAGATTTGCCTTCTAGCTTTGGTAAACCAGCTGCAGAGACTGCAGATATTTTTTCCGGGCTAGAATCTCTTGATGACATTCTCAACCCAGCTGCAACTGGTACAGGAAAACCAGATCTTAAATCTTTCAATGTGAAGGGTGCAGAGGAAAATTTTGTCCTTCCAGGATATGATAGCAAAACTAGGACAGTAACACAGGAAGGCGCTGACTTGAATCCTGACTGCCCAATTGACAATGTCTATGATTATCAATCCATGAAATCTGCCACAGATCCAACGTCTGAAATTCCAAGGCAGGAAGGGTTGACAAATTCTGCAGATAGTCCCACATTGGCTGACTTTTTGCAGCAAGATGGAACTGGAGAGAAAGAAGATGCTAATGAGAGAAAAAAATCTGTAAGGAAGAATAAAAGATCGTCTAATGCTGGTGTGGAAGATAAAGGTGGTAAAACCTCAAGGAAGCCGAGAAAACAATCAGTTCGTAAACCTGCTAAAAACTCATTGAATGAGCCTGTTCAGGATGATGATGTCCTCGACCCTCCTTATGAGTTTGATGGAGATGAACTTCAAGAAAATGACGACGAGGATGAAGTGGATAATTCATCCAAGAAAAGAGCATCAACAAGTTCAAAGAAGAAATCTGTGGCTAAAAATGGAAAAACATCTAAAAAACGCAAGAAGGCTAATGATGATTTAGACGAGGTTACTGAAGAACCTCCTAAAAAGTTCCCACATTCATCTCGGCGTAGAAAAAGATGTGTGGACAAGGCTCTGCTGGATGATGACTATCTTGATCAACGAACATTACCTCTTAGGGATATTATTTTACTTGCAGAACATAAGGAGCGACTGGCAAAAAAGGAGGCAACAACTACCAATACATCTTCCACCAATCAAAGCGATGGGATTGGAGATTTTCTTCATGAGGCTGATGCTAACAATGAAGAGGAGTTTTATGGGTCAGATGATGGTTATAGAGACCCATATGATGGTCAATATCAAGCCAGTGAAAATATTACATCAACTGCTCCTTTATTGAATTACCAGTCATTCATGGACAAGGCACCTAGGGGAAAATGGTCAACACGAGATACTGAAAAGTTTTATGAGGCTATTAGGCAGTTTGGCACAGATTTTACTATGATACAGCAGCTTTTCCCTGATAAAACACGTCATCAAATTAAGTTGAAGTACAAGAAAGAAGAGCGGCAACAACCTTTACTGTTATCTGATGCCGTGAATAATCCTACAAAAGATCTTTCTTTATTTAAATTGGTGATTGAGAGACAGAATCAAAAGTCTAAGGAAGAACAAGATGCCGCTGGAGATGCCTCAGATTTAATGCCTGGGGAGGAAGTTGAGGACCCGACACCTGAAATTAATGAAGAGATTGCAACAGCCCAGCAGGAGCAGGACCACATTAATGTTAAAGATCAGGATGATTCTATGGCATATCCAGTTCCAGGGCAATCTGACGACGACGATGATGATGATGGTGAAGATCCATTACTAAAATGGTCTCAGTATCAAAGTTCTATTTAG 2373 0.4088 MDDFFDDIAPIVPTTRARPGTRFAPKAKAKPKQWIQKNVPASSENSISSKDGNNVLVDSSTTHKESEGISQNESHNVVAVSSSIEEPIRSGHNPDIDVNDVTAQPVQPANAVESVLNSVAAPSTNCATIGRNKELAVNGEGSFLDSNKNLEVIDNSLEVSLNVGFKSASGDSNTGISESNIHSNFGFEEVPQVLSSEFEFDPFSDDVLPDPRPGTRNAKKFQPKIKPRPRVSNTPATASASSGIPFSEDNRSLEAVIPSHPDSLNAMTSEAVVHDGTRDLPSSFGKPAAETADIFSGLESLDDILNPAATGTGKPDLKSFNVKGAEENFVLPGYDSKTRTVTQEGADLNPDCPIDNVYDYQSMKSATDPTSEIPRQEGLTNSADSPTLADFLQQDGTGEKEDANERKKSVRKNKRSSNAGVEDKGGKTSRKPRKQSVRKPAKNSLNEPVQDDDVLDPPYEFDGDELQENDDEDEVDNSSKKRASTSSKKKSVAKNGKTSKKRKKANDDLDEVTEEPPKKFPHSSRRRKRCVDKALLDDDYLDQRTLPLRDIILLAEHKERLAKKEATTTNTSSTNQSDGIGDFLHEADANNEEEFYGSDDGYRDPYDGQYQASENITSTAPLLNYQSFMDKAPRGKWSTRDTEKFYEAIRQFGTDFTMIQQLFPDKTRHQIKLKYKKEERQQPLLLSDAVNNPTKDLSLFKLVIERQNQKSKEEQDAAGDASDLMPGEEVEDPTPEINEEIATAQQEQDHINVKDQDDSMAYPVPGQSDDDDDDDGEDPLLKWSQYQSSI 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05036 790 Coils Coil 495 515 - -
Trre8g05036 790 MobiDBLite consensus disorder prediction 365 528 - -
Trre8g05036 790 MobiDBLite consensus disorder prediction 708 790 - -
Trre8g05036 790 MobiDBLite consensus disorder prediction 453 473 - -
Trre8g05036 790 Pfam Myb DNA-binding like 627 712 IPR039467 -
Trre8g05036 790 MobiDBLite consensus disorder prediction 484 500 - -
Trre8g05036 790 ProSiteProfiles SANT domain profile. 636 680 IPR017884 -
Trre8g05036 790 MobiDBLite consensus disorder prediction 365 392 - -
Trre8g05036 790 MobiDBLite consensus disorder prediction 501 521 - -
Trre8g05036 790 Gene3D - 637 718 - -
Trre8g05036 790 MobiDBLite consensus disorder prediction 36 88 - -
Trre8g05036 790 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 18 790 - -
Trre8g05036 790 MobiDBLite consensus disorder prediction 232 248 - -
Trre8g05036 790 MobiDBLite consensus disorder prediction 395 430 - -
Trre8g05036 790 SMART sant 633 681 IPR001005 -
Trre8g05036 790 CDD SANT 636 677 IPR001005 -
Trre8g05036 790 MobiDBLite consensus disorder prediction 205 249 - -
Trre8g05036 790 MobiDBLite consensus disorder prediction 15 92 - -
Trre8g05036 790 SUPERFAMILY Homeodomain-like 635 683 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05036 Trre-Chr8 53103264 53109064 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre8g05036 Myb_DNA-bind_7 1.9e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05036 K15198 - gmx:100792788 634.024