LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g05034	ATGGATGATTTTTTTGATGATATTGCTCCTATTGTTCCTACTACACGTGCTAGACCAGGTACAAGGTTTGCGCCGAAGGCGAAGGCGAAACCGAAACAATGGATTCAAAAGAATGTACCTGCATCATCAGAAAATTCAATTTCATCTAAAGATGGGAACAATGTGCTTGTTGATTCATCAACCACTCACAAAGAATCTGAAGGAATTTCTCAGAATGAATCTCATAATGTAGTTGCTGTAAGTTCCTCAATTGAAGAACCTATAAGGTCTGGTCATAATCCCGATATCGATGTCAATGACGCACAACCAGTTCAGCCTGCTAATGCTGTAGAGAGTGTATTAAATAGTGTGGCTGCTCCATCTACTAATTGCGCAACCATAGGTAGGAACAAAGAATTGGCTGTAAATGGAGAAGGTTCATTTCTTGATAGCAATAAGAATTTGGAAGTTATTGATAATTCATTGGAAGTTAGCCTAAACGTGGGCTTCAAAAGTGCTTCAGGCGACAGTAACACTGGAATATCTGAGAGCAACATCCATTCAAATTTTGGGTTTGAAGAAGTGCCACAGGTCTTGTCTTCGGAATTTGAGTTTGATCCTTTCAGCGATGATGTCCTCCCTGATCCCAGGCCCGGCACTAGGAATGCCAAAAAGTTTCAACCCAAGATTAAGCCACGGCCTAGAGTCAGCAATACACCAGCTACTGCTTCTGCTTCATCCGGCATTCCATTCTCTGAAGACAATAGAAGCTTGGAAGCAGTTATTCCTTCTCATCCAGATTCCCTGAATGCTATGACATCAGAGGCTGTAGTCCATGATGGAACTAGAGATTTGCCTTCTAGCTTTGGTAAACCAGCTGCAGAGACTGCAGATATTTTTTCCGGGCTAGAATCTCTTGATGACATTCTCAACCCAGCTGCAACTGGTACAGGAAAACCAGATCTTAAATCTTTCAATGTGAAGGGTGCAGAGGAAAATTTTGTCCTTCCAGGATATGATAGCAAAACTAGGACAGTAACACAGGAAGGCGCTGACTTGAATCCTGACTGCCCAATTGACAATGTCTATGATTATCAATCCATGAAATCTGCCACAGATCCAACGTCTGAAATTCCAAGGCAGGAAGGGTTGACAAATTCTGCAGATAGTCCCACATTGGCTGACTTTTTGCAGCAAGATGGAACTGGAGAGAAAGAAGATGCTAATGAGAGAAAAAAATCTGTAAGGAAGAATAAAAGATCGTCTAATGCTGGTGTGGAAGATAAAGGTGGTAAAACCTCAAGGAAGCCGAGAAAACAATCAGTTCGTAAACCTGCTAAAAACTCATTGAATGAGCCTGTTCAGGATGATGATGTCCTCGACCCTCCTTATGAGTTTGATGGAGATGAACTTCAAGAAAATGACGACGAGGATGAAGTGGATAATTCATCCAAGAAAAGAGCATCAACAAGTTCAAAGAAGAAATCTGTGGCTAAAAATGGAAAAACATCTAAAAAACGCAAGAAGGCTAATGATGATTTAGACGAGGTTACTGAAGAACCTCCTAAAAAGTTCCCACATTCATCTCGGCGTAGAAAAAGATGTGTGGACAAGGCTCTGCTGGATGATGACTATCTTGATCAACGAACATTACCTCTTAGGGATATTATTTTACTTGCAGAACATAAGGAGCGACTGGCAAAAAAGGAGGCAACAACTACCAATACATCTTCCACCAATCAAAGCGATGGGATTGGAGATTTTCTTCATGAGGCTGATGCTAACAATGAAGAGGAGTTTTATGGGTCAGATGATGGTTATAGAGACCCATATGATGGTCAATATCAAGCCAGTGAAAATATTACATCAACTGCTCCTTTATTGAATTACCAGTCATTCATGGACAAGGCACCTAGGGGAAAATGGTCAACACGAGATACTGAAAAGTTTTATGAGGCTATTAGGCAGTTTGGCACAGATTTTACTATGATACAGCAGCTTTTCCCTGATAAAACACGTCATCAAATTAAGTTGAAGTACAAGAAAGAAGAGCGGCAACAACCTTTACTGTTATCTGATGCCGTGAATAATCCTACAAAAGATCTTTCTTTATTTAAATTGGTGATTGAGAGACAGAATCAAAAGTCTAAGGAAGAACAAGATGCCGCTGGAGATGCCTCAGATTTAATGCCTGGGGAGGAAGTTGAGGACCCGACACCTGAAATTAATGAAGAGATTGCAACAGCCCAGCAGGAGCAGGACCACATTAATGTTAAAGATCAGGATGATTCTATGGCATATCCAGTTCCAGGGCAATCTGACGACGACGATGATGATGATGGTGAAGATCCATTACTAAAATGGTCTCAGTATCAAAGTTCTATTTAG	2367	0.409	MDDFFDDIAPIVPTTRARPGTRFAPKAKAKPKQWIQKNVPASSENSISSKDGNNVLVDSSTTHKESEGISQNESHNVVAVSSSIEEPIRSGHNPDIDVNDAQPVQPANAVESVLNSVAAPSTNCATIGRNKELAVNGEGSFLDSNKNLEVIDNSLEVSLNVGFKSASGDSNTGISESNIHSNFGFEEVPQVLSSEFEFDPFSDDVLPDPRPGTRNAKKFQPKIKPRPRVSNTPATASASSGIPFSEDNRSLEAVIPSHPDSLNAMTSEAVVHDGTRDLPSSFGKPAAETADIFSGLESLDDILNPAATGTGKPDLKSFNVKGAEENFVLPGYDSKTRTVTQEGADLNPDCPIDNVYDYQSMKSATDPTSEIPRQEGLTNSADSPTLADFLQQDGTGEKEDANERKKSVRKNKRSSNAGVEDKGGKTSRKPRKQSVRKPAKNSLNEPVQDDDVLDPPYEFDGDELQENDDEDEVDNSSKKRASTSSKKKSVAKNGKTSKKRKKANDDLDEVTEEPPKKFPHSSRRRKRCVDKALLDDDYLDQRTLPLRDIILLAEHKERLAKKEATTTNTSSTNQSDGIGDFLHEADANNEEEFYGSDDGYRDPYDGQYQASENITSTAPLLNYQSFMDKAPRGKWSTRDTEKFYEAIRQFGTDFTMIQQLFPDKTRHQIKLKYKKEERQQPLLLSDAVNNPTKDLSLFKLVIERQNQKSKEEQDAAGDASDLMPGEEVEDPTPEINEEIATAQQEQDHINVKDQDDSMAYPVPGQSDDDDDDDGEDPLLKWSQYQSSI	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	230	246	-	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	393	428	-	-
	Trre8g05034	788	ProSiteProfiles	SANT domain profile.	634	678	IPR017884	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	16	93	-	-
	Trre8g05034	788	CDD	SANT	634	675	IPR001005	-
	Trre8g05034	788	SMART	sant	631	679	IPR001005	-
	Trre8g05034	788	PANTHER	RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B	18	788	-	-
	Trre8g05034	788	Gene3D	-	635	716	-	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	36	88	-	-
	Trre8g05034	788	Coils	Coil	493	513	-	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	363	526	-	-
	Trre8g05034	788	Pfam	Myb DNA-binding like	625	710	IPR039467	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	706	788	-	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	451	471	-	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	482	498	-	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	363	390	-	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	499	519	-	-
	Trre8g05034	788	MobiDBLite	consensus disorder prediction	199	247	-	-
	Trre8g05034	788	SUPERFAMILY	Homeodomain-like	633	681	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g05034	Trre-Chr8	53103264	53109064	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Trre8g05034		Myb_DNA-bind_7	1.9e-27	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g05034	K15198		-	gmx:100792788	628.246