Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05033 ATGACCAACGCTTTCTCTTTGATAATACAACAATACAAAGCGTTGCTAAAAAAAAATATATTACTCTCATGGCGAAGCAAGAGATCAATTCTTCTTCAATTACTCTCACCAATTATCTTCATCTTCTTAATATTCGCCATTGACAAAGCAATTCAAGCTCAAACTTCAACAACTTCAGCATACAAATCAATTAAAAACCCTATTTCACAACCTTCACCATCAATTCCACCTTGCGAACACAAATTCTTCATAAAAAAACCTTGTTACGATTTCGTATGGAGTGGTGATACGAATCCGAAGTTTCGTACAATTGTTGATCGAATTATTAGTAATAATCCAGGTAGGGTTATACCTAATTGGAAAGTTAAATCGTTTGGTGATAAATTTGAAGTTGATGAATGGCTTTTGAATAATCCTATGCAATGTCCTGGTGCGATTCATTTTGGTGAAAAGAATGATAGTGTTATTAGTTATGGAATTCAGACTAATTCTACTGTTCTTCAGAAACGTGGAAAGTATGAAGATCCTACTTTTTCTTTTCAACTTCCTCTTCAGCTTGCTGCTGAACGTGAAATCGCCAGATTCCTCATTGGAGACCCAAGCTTCAAGTGGAATGTGTTTTTGAAGGAATTCCCGCACCCATCAATGAATCCAATCTCTGCTGTTAGAACAATAGGTCCATCATTTTTTCTAGCAATTGCCATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTGACAGAGAAAGAGCTTAAACTTCGCCAGGCAATGACAGTGATGGGGCTTTACGACTCTGCATACTGGTTATCATGGCTAACCTGGGAAACAGTTGTTACACTCATATCATCTATTCTCATAGTTCTCTCTGGCATGATGTTTCAGTTTAGTTTCTTCTTGAAAAATAGTTTCGCTGTTCTGTTCTTTTTGTTCTTCCTATTTGAACTAAACATGACTGGGTTGGCCTTCATGTTATCTGCTTTCATTCGTAAATCATCTTCGGCAACAACAATCGGCTTCTTCATATTTATTATCGGCTTTGTGACACAGCTCGTCGTACAAGCCGGATTTCCGTATTCAGATAGCTTCTCTGCTACTTACCGAAATTTATGGTCATTGTTTCCGCCTAATCCTTTTGCTCAAGCCCTGACTGTGCTTTCAGATGCTGTTTCAACCCCTGAAAATGATGGTGTTAGCTGGAGTAAACGGGGATCATGCACCGTTGACAACGATGACTGTGTGATGACAATTAATGATATTTATAAATGGCTTCTTGCTACATTCTTTTTGTGGTTCGTTTTGGCCATGTACTTTGACAATATAATCCCAAATGCAATGGGTGTGAGGAAATCTGTGTTATACTTTCTAAATCCTCATTATTGGACAGGAAACGGAGGACAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCTTAATTTCACCCCATCATGAAGAAAATAGTACAGCAGACGATGAAGATGTCCTTGAAGAAGAAAATGCTGTGAGACAGCAACTAACACAAGGTGTGGTTGACGCAAATGTTGCTGTTCAGGTACATGGCATTGTGAAGACTTATCCCGGTACATTTAGCATCGGTTGCTGCTGTAAATGTAAAAGAACTGCTCCTTACCATGCTCTTAAGGGCTTGTGGGTGAACTTTACAAAGGATCAGTTATTTTGTCTTTTAGGACCTAATGGAGCTGGAAAAACTACAATTATTAATTGTTTGACAGGAATAACTCCAGTAACTGATGGAGATGCGTTGATTTATGGGCATTCAATCCGAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCCTATGGGATGCACTGTCTGGACAAGAACACCTCGAACTCTTCGCTACTATTAAAGGCATATCCCCAGCTTCTATAAAATCGATTACTCAGACATCATTGGCAGAGGTGAGACTCGTGGATGCAGCTAAAGTAAGATCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTTAGTGTTGCAATTGCTCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACAAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAAAGGGCGTGCCATTATTCTCACAACACATTCTATGGAAGAAGCTGACATTCTAAGTGACCGAATAGGAATCATGGCGAAGGGAAGACTCCGCTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTCGGTACTGGTTTTATTGCTAATATTAGCTTCTATGGCAACAATAATGAACATAGTCCTCCAAATAGTGATGCAATATCAGCAAGACATCGTGAGGCTGTGAAGGAATTCTTTAAGAATCGTTTAGATGTAGTACCAAAAGAGGAGAACAATAACTTTCTAACTTATGTGATTCCTCATGAAAGAGAGGCACTCCTTACAAATTTTTTTTCGGAGCTCCAAGATAGAGAAGAAGAGTTTGGCATATCTGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAAGCAAGCAGAGCTAGAAAGTGCTACAGCTGAAGGGAGCTTAGTGACTTTGACCTTGACATCCGGAGAGTCTGCAGAGATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAATATCCCACAGGTTTTATGGTAGAAGTATACTGGGAACAAGATGACACCGGTGCCCTTTGTGTCGCCGGCCACTCGCAGAAAGCTCCAATTCCTCAAAATATCCAACTACCATCATCTGCTACTGCAAGACAACGCCGGTCAGCGTCAGTTCACGGGGTTGTGATTGATCCAAGTCAAGTTACTTCTGTCAATTTTCAGTGA 2883 0.3999 MTNAFSLIIQQYKALLKKNILLSWRSKRSILLQLLSPIIFIFLIFAIDKAIQAQTSTTSAYKSIKNPISQPSPSIPPCEHKFFIKKPCYDFVWSGDTNPKFRTIVDRIISNNPGRVIPNWKVKSFGDKFEVDEWLLNNPMQCPGAIHFGEKNDSVISYGIQTNSTVLQKRGKYEDPTFSFQLPLQLAAEREIARFLIGDPSFKWNVFLKEFPHPSMNPISAVRTIGPSFFLAIAMFNFVLQMSSLVTEKELKLRQAMTVMGLYDSAYWLSWLTWETVVTLISSILIVLSGMMFQFSFFLKNSFAVLFFLFFLFELNMTGLAFMLSAFIRKSSSATTIGFFIFIIGFVTQLVVQAGFPYSDSFSATYRNLWSLFPPNPFAQALTVLSDAVSTPENDGVSWSKRGSCTVDNDDCVMTINDIYKWLLATFFLWFVLAMYFDNIIPNAMGVRKSVLYFLNPHYWTGNGGQKVKEGGVCSCLISPHHEENSTADDEDVLEEENAVRQQLTQGVVDANVAVQVHGIVKTYPGTFSIGCCCKCKRTAPYHALKGLWVNFTKDQLFCLLGPNGAGKTTIINCLTGITPVTDGDALIYGHSIRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLELFATIKGISPASIKSITQTSLAEVRLVDAAKVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNNEHSPPNSDAISARHREAVKEFFKNRLDVVPKEENNNFLTYVIPHEREALLTNFFSELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESATAEGSLVTLTLTSGESAEIPIGARFVGIPGTESAEYPTGFMVEVYWEQDDTGALCVAGHSQKAPIPQNIQLPSSATARQRRSASVHGVVIDPSQVTSVNFQ 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05033 960 FunFam ABC transporter A family member 2 505 769 - -
Trre8g05033 960 Pfam ABC-2 family transporter protein 27 436 IPR013525 GO:0016020|GO:0140359
Trre8g05033 960 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 515 761 IPR003439 GO:0005524
Trre8g05033 960 CDD ABC_subfamily_A 515 749 - -
Trre8g05033 960 Gene3D - 505 765 IPR027417 -
Trre8g05033 960 ProSitePatterns ABC transporters family signature. 663 677 IPR017871 GO:0005524|GO:0016887
Trre8g05033 960 SMART AAA_5 554 738 IPR003593 GO:0016887
Trre8g05033 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 743 IPR027417 -
Trre8g05033 960 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 490 858 IPR026082 GO:0016020|GO:0055085|GO:0140359
Trre8g05033 960 Pfam ABC transporter 546 690 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05033 Trre-Chr8 53091128 53097426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05033 559 780 Calmodulin-binding Proteins AT2G36910 24.034 1.44e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05033 - - ccaj:109790891 1557.35