Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05016 ATGGCAGGTAATAAGAGAAACCAAACAAGTCCTGTAGGAAGTCCAACATCAGGAAACATCTCAGACAGTTCATCCTCAAAAGAACAAGACAGGTTTCTACCAATTGCTAACGTAAGCCGTATAATGAAAAGAGCACTACCAGCAAATGCTAAAATCTCAAAAGAAGCTAAAGAAACTGTTCAAGAATGTGTTTCTGAGTTCATAAGTTTCATTACTGGTGAAGCTTCTGATAAGTGTCAAAGAGAAAAGAGAAAAACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGTTTTGAAAATTATGTTGGTCCTTTGAAAGTTTATCTTAATAATTATAGAGAAACTGAAGGAGAAAAGAGTAATAATAATTCTTCTTCTTCTATGGTTACTAGTACTAAACAAGATGATTATGATCTTAATAATTCTTCAATTGAAGTTAATCATGATGTTGTTGTTGGTGGATTTTATTCTCAAGTTATTAATGGAGGGATTGTGGATGAAACAGAACATGCAATTGGAAGTGGTAACAGAATCATGCCACCAAACCTTCGTTATAGGGTTGAATGGTAG 579 0.3402 MAGNKRNQTSPVGSPTSGNISDSSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKSNNNSSSSMVTSTKQDDYDLNNSSIEVNHDVVVGGFYSQVINGGIVDETEHAIGSGNRIMPPNLRYRVEW 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05016 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Trre8g05016 192 FunFam Nuclear transcription factor Y subunit B-3 21 146 - -
Trre8g05016 192 Gene3D Histone, subunit A 19 151 IPR009072 GO:0046982
Trre8g05016 192 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre8g05016 192 MobiDBLite consensus disorder prediction 1 32 - -
Trre8g05016 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre8g05016 192 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Trre8g05016 192 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Trre8g05016 192 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Trre8g05016 192 SUPERFAMILY Histone-fold 29 140 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05016 Trre-Chr8 52983769 52984347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05016 24 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 89.000 4.26e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre8g05016 CBFD_NFYB_HMF 9.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05016 K08065 - gmx:100797721 255.373