Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05014 ATGGCAGAAAACAACATTGCAACAAAATCCAACACACGGAAGAGAAAAATTGGTGAAATCAAGAAATTGGAAAATCCGAACAAGTTTGCCATGTCGTTTTCAAAGTGTAAAATCGGTCTTTTCAACAAAGTAACAGAGCTCTCTATTCTGTGCAAAGCAAAAACCGCACTCATTGTCATATCACCCGACAATGAGCTCTATGCATGTGGCTATCCTAATTGCGACACCGTCATTCAACAATTTTTGACAGGAAAAGACACCGTTGAAGATGGTGAGATAAAGAAGCATGAGGAGATTGTTGAAACCCAAAGGCTTGAATACGAGGCAATTGAAGATAAACTTAAAGAAGAAGAGAAGAATTTGAAAGCTATTATCGATGAAAAAAATAAGAGCGATTCTATTTTTCCTATTTGGTGGGGTGATTCTATTGATGATATGGATTTAGCTTCTCTCGAGGAATTTACATCTTCTTTACAAAATTTGAAACTTAATTTAGGTTCCGCCATTGACCAAAAAAAGTTAATGTTCACGTCCAATGTTCAATTTAACCCATTGTCAACTTTGATGTAA 570 0.3579 MAENNIATKSNTRKRKIGEIKKLENPNKFAMSFSKCKIGLFNKVTELSILCKAKTALIVISPDNELYACGYPNCDTVIQQFLTGKDTVEDGEIKKHEEIVETQRLEYEAIEDKLKEEEKNLKAIIDEKNKSDSIFPIWWGDSIDDMDLASLEEFTSSLQNLKLNLGSAIDQKKLMFTSNVQFNPLSTLM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05014 189 Gene3D - 31 108 IPR036879 GO:0003677|GO:0046983
Trre8g05014 189 PANTHER MADS BOX PROTEIN 15 165 - -
Trre8g05014 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 68 IPR002100 GO:0003677|GO:0046983
Trre8g05014 189 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre8g05014 189 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Trre8g05014 189 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre8g05014 189 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre8g05014 189 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre8g05014 189 Coils Coil 93 131 - -
Trre8g05014 189 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05014 Trre-Chr8 52964896 52965465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05014 12 162 Type I MADS-box Gene Family AT5G60440 29.878 9.73e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g05014 SRF-TF 7.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05014 - - tpra:123896833 211.846