Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05002 ATGTTGCAGCTTTCTATTCAACGAGCAAAGTTGAAGTTTCTTATGCCTCAGATATCTGCTTTGGGAAGTTCCCATTTCTCAACAACTGCTCAACCATTTTCCAGTAAACGCATTGCTCCGAGGGTTCCAAATCTTATTGGGGGAAGATTTCTCGACTCAAAATCATCAAATTCCATTGATGTTATAAACCCAGCAACACAAGAAGTTGTGTCACAAGTTCCATTGTCTACAGATGAAGAGTTTAAAGCTGCTGTATCTGCAGCAAAGAATGCATTTCCATCATGGCGTAACACTCCAGTTACAACACGTCAACGTGTTATGTTGAAGCTCCAGGAGCTCATACGCAGAGATATGGATAAACTCGCTCTTAATGTGACCACCGAACAAGGAAAGACACTGAAGGATGCACAAGGAGATGTGTTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGGAACTCTACAAATGGGAGAGTATGTTTCAAATGTATCTAATGGAGTCGACACCTTCAGCGTTAGAGAACCAATTGGTGTTTGTGCTGGTATTTGTCCTTTCAACTTTCCTGCGATGATTCCCTTGTGGATGTTCCCCTTGGCTGTTACCTGTGGCAATACCTTTGTTCTAAAACCGTCAGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAGTTGGCATTGGAGGCTGGTTTACCTGACGGTGTCTTAAATATTGTTCATGGAACCCATGATATTGTGAATGCCATTTGTGACGATGACGATATCAAAGCCATATCATTTGTTGGTTCGAATGTTGCTGGAATGCACATATATTCAAGAGCAGCTGCTAAAGGGAAACGTGTTCAGTCTAATATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTATAAATGCATTAGTTGCTGGTGGTTTTGGAGCTGCTGGACAGAGGTGCATGGCTCTCAGCACAGTTATTTTTGTGGGAGGCTCGCAATCATGGGAAACTAAAATTTTAGAGCGTGCCAAAGCTCTTAAAGTAAATGCTGGAATTGAACCTGATTCAGATCTTGGTCCGGTCATCAGCAAACAAGCAAAGGAGCGAGTGAACATGTTAGTTCAATCTGGGGTTGAAAGCGGTGCCAAACTACTCCTTGATGGAAGAAATATTGTGGTTCCAGGATATGAATCTGGCAATTTTGTTGGTCCAACCATCTTATCAAATATCACTACCAACATGGAATGCTACCAGGAGGAAATTTTTGGCCCAGTTCTTCTTTTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAATATTATCAACAAAAACAAGTATGGAAATGGTGCTTCTATATTTACTACTTCTGGTGTTTCTGCAAGGAAATTTCAGACTGAGATTGAGGCGGGACAGGTTGGCATCAACGTTCCTATTCCAGTTCCTTTGCCATTTTTCTCATTTACCGGCAACAAGGCGTCATTTGCTGGCGATCTCAATTTCTATGGCAAAGCAGGGGTTAACTTTTATACACAGATCAAAACAATAACACAGCTGTGGAAGGATTCAGTTGGTGGTAGCAAGATTAACTTGGCAATGCCAACCTCTCAAAAATCTTGA 1614 0.4226 MLQLSIQRAKLKFLMPQISALGSSHFSTTAQPFSSKRIAPRVPNLIGGRFLDSKSSNSIDVINPATQEVVSQVPLSTDEEFKAAVSAAKNAFPSWRNTPVTTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMGTLQMGEYVSNVSNGVDTFSVREPIGVCAGICPFNFPAMIPLWMFPLAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPDGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATINALVAGGFGAAGQRCMALSTVIFVGGSQSWETKILERAKALKVNAGIEPDSDLGPVISKQAKERVNMLVQSGVESGAKLLLDGRNIVVPGYESGNFVGPTILSNITTNMECYQEEIFGPVLLFMEADSLEEAINIINKNKYGNGASIFTTSGVSARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQLWKDSVGGSKINLAMPTSQKS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05002 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Trre8g05002 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 4 534 IPR010061 GO:0004491
Trre8g05002 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Trre8g05002 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491
Trre8g05002 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Trre8g05002 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491
Trre8g05002 537 SUPERFAMILY ALDH-like 37 516 IPR016161 GO:0016491
Trre8g05002 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Trre8g05002 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
Trre8g05002 537 Pfam Aldehyde dehydrogenase family 52 514 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05002 Trre-Chr8 52905903 52910235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05002 2 502 Aldehyde Dehydrogenase Gene Family AT2G14170 78.044 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05002 K00140 - gmx:100791508 959.518