Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04999 ATGGATTCTTCATCTTCCCAATATGTTTCCACAAGAAGTTTTGGTGTATATGATCCTTCCCATCAATTTACTATATGGGAAGATCATTTCAAGAGTAATGGTGATTTAAGTTTATATGAACCTAACATGAAGTTAAATAATCAGTCAGAGGATGCTTCTTTTGGAATATTGGGAACATCTATCAAGTATGACCAACAACCTAACAAACTTACTGATAAGATGCAAAGACGTCTCGCACAAAACCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATACAACAGTTAGAATCGTGTCGTTTGAAGTTAGTGCAGGTAGAGCAAGAGCTAGATAATACAAGACAACAGGGATTATATATTGGTGGTGGATTGGATTCTAATAATTTAGGTTTTGCTGGTTCTGCAAATTCAGAAATAACAACTTTTAAGATGGAGTATGAACATTGGGTGGAAGAGCAAAACAGACAAATCTTGGAATTGAATAGTGCTTTAAGTGCTCATAAAAGTGACATACAGATAGAGGAACTTGTAAATGGCATGATGAATCACTATTTCAAACTCTTTTGCATGAAATCTGATGCTGCAAAAATAGATGTTTTCTATGTTATCACCGGCATGTGGAAAACAACATCCGAACAATTTTTCTTATGGATTGGAGGTTTTCGCCCCTCCGAACTTCTAAAGGTTCTGGTCCCTTTGATTGAACCATTGACAGAAGACCAACGGTTTAATGCCTATAATCTTGAAAAGTCATGTCGGCAAGCAGAAGATGCACTTTCACTAGGTATGGAAAAACTCCAGGGAATGCTTACCGAAACAGTAGCTGCAGGAGAACTCATTGAAGGAATTAACACTCCACATATGGATATTGCAATAGAGAGGCTGGAAGCTCTGGCTAGCTTTGTTAACCAGGCTGATCATTTACGACAGGAAACCTTGCAGCAGATGTCTAGAATACTTACCATACGTCAAACTGCTCGATGGCTGCTTGTTTTGGGCGAGTATTTTCAACGCCTAAGGGATTTAAGCAAGGTTTGGGCCAATCGTGGCCGTGAACCTGCTTAG 1074 0.3911 MDSSSSQYVSTRSFGVYDPSHQFTIWEDHFKSNGDLSLYEPNMKLNNQSEDASFGILGTSIKYDQQPNKLTDKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLVQVEQELDNTRQQGLYIGGGLDSNNLGFAGSANSEITTFKMEYEHWVEEQNRQILELNSALSAHKSDIQIEELVNGMMNHYFKLFCMKSDAAKIDVFYVITGMWKTTSEQFFLWIGGFRPSELLKVLVPLIEPLTEDQRFNAYNLEKSCRQAEDALSLGMEKLQGMLTETVAAGELIEGINTPHMDIAIERLEALASFVNQADHLRQETLQQMSRILTIRQTARWLLVLGEYFQRLRDLSKVWANRGREPA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04999 357 SUPERFAMILY Leucine zipper domain 73 106 IPR046347 GO:0003700|GO:0006355
Trre8g04999 357 Gene3D - 72 121 - -
Trre8g04999 357 Coils Coil 153 173 - -
Trre8g04999 357 Coils Coil 92 119 - -
Trre8g04999 357 Pfam Seed dormancy control 160 234 IPR025422 GO:0006351|GO:0043565
Trre8g04999 357 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 76 91 IPR004827 GO:0003700|GO:0006355
Trre8g04999 357 SMART brlzneu 69 151 IPR004827 GO:0003700|GO:0006355
Trre8g04999 357 FunFam BZIP family transcription factor 72 121 - -
Trre8g04999 357 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 71 113 IPR004827 GO:0003700|GO:0006355
Trre8g04999 357 ProSiteProfiles DOG1 domain profile. 142 352 IPR025422 GO:0006351|GO:0043565
Trre8g04999 357 PANTHER TRANSCRIPTION FACTOR TGA9 3 355 - -
Trre8g04999 357 Pfam bZIP transcription factor 72 101 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04999 Trre-Chr8 52890188 52892374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04999 1 356 Calmodulin-binding Proteins AT5G10030 61.096 2.13e-158 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre8g04999 DOG1 3.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04999 K14431 - gmx:100780003 512.301