Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04998 ATGGATTCTTCATCTTCCCAATATGTTTCCACAAGAAGTTTTGGTGTATATGATCCTTCCCATCAATTTACTATATGGGAAGATCATTTCAAGAGTAATGGTGATTTAAGTTTATATGAACCTAACATGAAGTTAAATAATCAGGTTTGTGTGCAATCAGAGGATGCTTCTTTTGGAATATTGGGAACATCTATCAAGTATGACCAACAACCTAACAAACTTACTGATAAGATGCAAAGACGTCTCGCACAAAACCGAGAGGCTGCTCGTAAGAGTCGTTTGAAGAAAAAGGCTCATATACAACAGTTAGAATCGTGTCGTTTGAAGTTAGTGCAGGTAGAGCAAGAGCTAGATAATACAAGACAACAGGGATTATATATTGGTGGTGGATTGGATTCTAATAATTTAGGTTTTGCTGGTTCTGCAAATTCAGAAATAACAACTTTTAAGATGGAGTATGAACATTGGGTGGAAGAGCAAAACAGACAAATCTTGGAATTGAATAGTGCTTTAAGTGCTCATAAAAGTGACATACAGATAGAGGAACTTGTAAATGGCATGATGAATCACTATTTCAAACTCTTTTGCATGAAATCTGATGCTGCAAAAATAGATGTTTTCTATGTTATCACCGGCATGTGGAAAACAACATCCGAACAATTTTTCTTATGGATTGGAGGTTTTCGCCCCTCCGAACTTCTAAAGGTTCTGGTCCCTTTGATTGAACCATTGACAGAAGACCAACGGTTTAATGCCTATAATCTTGAAAAGTCATGTCGGCAAGCAGAAGATGCACTTTCACTAGGTATGGAAAAACTCCAGGGAATGCTTACCGAAACAGTAGCTGCAGGAGAACTCATTGAAGGAATTAACACTCCACATATGGATATTGCAATAGAGAGGCTGGAAGCTCTGGCTAGCTTTGTTAACCAGGCTGATCATTTACGACAGGAAACCTTGCAGCAGATGTCTAGAATACTTACCATACGTCAAACTGCTCGATGGCTGCTTGTTTTGGGCGAGTATTTTCAACGCCTAAGGGATTTAAGCAAGGTTTGGGCCAATCGTGGCCGTGAACCTGCTTAG 1086 0.3913 MDSSSSQYVSTRSFGVYDPSHQFTIWEDHFKSNGDLSLYEPNMKLNNQVCVQSEDASFGILGTSIKYDQQPNKLTDKMQRRLAQNREAARKSRLKKKAHIQQLESCRLKLVQVEQELDNTRQQGLYIGGGLDSNNLGFAGSANSEITTFKMEYEHWVEEQNRQILELNSALSAHKSDIQIEELVNGMMNHYFKLFCMKSDAAKIDVFYVITGMWKTTSEQFFLWIGGFRPSELLKVLVPLIEPLTEDQRFNAYNLEKSCRQAEDALSLGMEKLQGMLTETVAAGELIEGINTPHMDIAIERLEALASFVNQADHLRQETLQQMSRILTIRQTARWLLVLGEYFQRLRDLSKVWANRGREPA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04998 361 SMART brlzneu 73 155 IPR004827 GO:0003700|GO:0006355
Trre8g04998 361 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 117 IPR004827 GO:0003700|GO:0006355
Trre8g04998 361 ProSiteProfiles DOG1 domain profile. 146 356 IPR025422 GO:0006351|GO:0043565
Trre8g04998 361 PANTHER TRANSCRIPTION FACTOR TGA9 3 359 - -
Trre8g04998 361 Gene3D - 76 125 - -
Trre8g04998 361 Coils Coil 96 123 - -
Trre8g04998 361 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Trre8g04998 361 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700|GO:0006355
Trre8g04998 361 Pfam bZIP transcription factor 76 105 IPR004827 GO:0003700|GO:0006355
Trre8g04998 361 Coils Coil 157 177 - -
Trre8g04998 361 FunFam BZIP family transcription factor 76 125 - -
Trre8g04998 361 SUPERFAMILY Leucine zipper domain 77 110 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04998 Trre-Chr8 52890188 52892374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04998 1 360 Calmodulin-binding Proteins AT5G10030 60.822 1.05e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre8g04998 DOG1 3.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04998 K14431 - gmx:100780003 521.931