Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04991 ATGCATTTTCATTCATCCAAGGAGGAAGCTTTGAAGAGTCTAAAGCTGGCTACCACACTATCTTGGAGGCATTCTGCCAACAATGGCAGCAGCCATGCTTCCACTGATCTGGAAAGGAATGGTGATGGGAAGGCTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTATGAAGATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGATGGGACTTTAGCTAGTGTTGCTCAATGCATTGAGCAGCTGCGCCAGAGCTCGTCTTCTGTGCACGAGAAAGAGTATTCCTTAAGGCAGTTAATGGATCTTATAGATATGCGTGAAAATGCATTTAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGCTCACTTTGCAAAGAAAATGAACTGAGGGTAAAAGTTTTGCTTGGTGGATGTATTCCTCCATTGCTTGGTCTCCTAAAGTCAAGTTCTACTGAAGGTCAAATTGCTGCTGCAAAGACTATATATGCTGTCTCACAAGGTGGGGTGAAAGATCATGTTGGTTCCAAAATATTTTCAACCGAAGGAGTAGTACCAGTGCTTTGGGAGCAGTTGCGAACTGGTCTGAAAGCCGGAAATGTCGTTGAAAGTTTACTGACGGGAACATTGAAAAATCTCTCTAGCAATGCTGAGGGATTCTGGAATGCAACAATTCAAGCGGGAGGAGTAGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCACTTTAGCCAATGTTTGCTTTTTGCTTGCTGCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGAATGCAGAGGTGACTAAACAACTCTTGAAACTATTAGGCCCTGGTAACGATGACCTCGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCTCAATGCAAAGAGGCAAGGCGGGAAATAGCCAGTTCTAATGGCATTCCTGCTTTGATCAATGCTACTATAGCTCCTTCTAAAGAGTACATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGCCTTGAATCATGCTCTTCCTCTACCCAAATTGCCGACACTTTAGGAGCTATAGCATCAGCTCTTATGATATATGATAACAAGGCAGAATCTACCAAACCATCAGATCCTTTGGTGGTTGAACAGACATTACTGAAACAATTCAAACCTCGCTTGCCCTTCCTTGTGCAAGAACGGACCATTGAAGCTCTAGCTAGTTTGTACGGCAATCCCATACTCTCGGCTAAACTAGCAAATTCTGATGCAAAACATTTGCTCGTTGGTCTGATAACAATGGCTTCCAATGAAGTGCAAGAGGAGCTTATAAAAGCTCTGTTGACACTGTGCAAAAGTGAAGGCAGCCTATGGCGTGCACTTCAGGGACGTGAAGGAATTCAGCTATTGATATCTCTTCTTGGTCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCTTTGCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCAATTACCGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAAACAGGATCTGCAAAAGCAAAGGAAGATTCGGCAAGAATCCTTAAGAACTTGTGCAATCATAGTGAAGATATACGTGCTTGCGTTGAAAGTGCAAATGCTGTTCCTGCGTTGTTGTGGCTATTGAAGAATGGAAGTCCTAATGGGAAGGATATTGCAGCAAAGACCATAAATCATTTAATTCATAAATCTGATACTACGACCATCAGTCAACTTACAGCATTATTAACAAGTGAACTTCCTGATTCTAAGATATATGTTTTGGATGCTTTGAGAAGTATGCTCTGTGTTGCTCCACTTAGCGACATTTTACGCGAAGGTAGTGCTGCTGGTGATGCATTTGATACTATGATAATGTTATTGAGCTCTACCAAGGAAGAAACTCAGGCAAAATCTGCGTCAGCTCTGGCCGAAATTTTTGAAGCAAGGAAAGATTTGCGTGAAAGTAGCGTTGCTGTCAAAGCTCTTTGTTCAGCCATGAAATTGCTTAATGTTGAATCTGAAAGTATCCTAATGGAGTCCTCAAACTGCCTGGCTTCAATTTTTCTTTCCATCAAAGAGAACAAGGATGTAGCAGCTGTTGCTAGAGATGCATTATCCTCGCTGGTTGCACTAGCTAACTCTTCGATTTTGGAAGTGGCAGAAATGGCTATAGGTGCTGTAGCAAATCTTATTTTGGATATTGAAATGGCAAAAAAAGTTGTTGCAGAAGAAGTTATCTTACCTGCTACTAGAGTATTGAATGAAGGCACAATTTCTGGAAAAACTCATGCTGCAGCAGCAATTGCTCGCCTTTTATATTCTCATAAAGTTGATAATGCTGTTACTGATTGTGTGGATCGTGCCGGAACTGTTCTTGCATTAGTTTCTTTTTTGGATTCTTCTGTCAATGGATCTATTGACACATCAGAGGCTTTAGAAGCACTTGTCATTCTGTCCAGGTCAGAAGAGAGCGGCGCAAATATTAAATCAGCATGTGCAGTTTTGGCTGAATTCCCTGAAAGCTTAATCCCAATAGTCCTGTGCATTGCTAATTCAACACCGACATTGCAAGATAAAACAATCGAGATTTTATCTCGATTATGTAAAGATCAGCCTACTGTTTTAGGAGATAGTGTTATTTCTGCCTCTGGATGTATATCTTCAATAGCTAAAAGGATAATTAGTTCCACTAATGTGAAGGTCAAAATTGGTGGTGTTGCGCTCCTTATTTGTGCTGCAAAAACAAATCATCAGAGACTGGTGGAGGATCTCAATATATCAAACTTGTCTGTTAACCTTATTAAGTCTCTAGTTGATATTCTTATTTCTGCACAGTCTTCTTTGGGTAATAGCGGGGATGATGATGACAAGGAATCCATCAGCATATGCAGGCATGAAAAAGAAGAGGCCAACGGCCGTGAATCCAAAACTGGAACTTCCATTATATGCGGTGTTGACTTAGCTATATGGTTACTATCTATTCTTGCTTGCCATGATGGAAAAAATAAAAATGCAATAATGAAGGCTGGAGCAATTGATGCCGTCACCGACAGGATCTCAAATTGTTACTCACAATATTCTCAGGTTGACTACAAAGAAGATAACAGCACGTGGATTTGTGCCTTGTTGTTGGCAATCTTATATCAAGATAGAGATATCATACGGGCACATGCAACCACAAAGTCTGTACCAGCACTTGCCAATTTATTGAAGTCAGACGAAACCGAGAACAAATATTTTGCTGCACAATCAATAGCCAGCCTTGTTTGTAATGGTAATAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACCGATATACAAGATCTTCTTGAAATGTCCGAGGAATTTTCTTTAGTGCGTTATCCTGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGCGCCACTTCTCGGAAGGCAATACCAGCCCTAGTTGATCTTCTCAAACCAATTCCGGATCGCCCAGGTGCACCATTTTTAGCTCTCGGGCTTTTAACTCAACTTGGTAGAGATTGTCCGTCAAATAAGACTATAATGGTAGAATCCGGGGCTTTAGAGGCTCTTACGAAGTATCTTTCCCTTGGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGTAGTGCTGATATACGAAAACACGACTCTGCATTTGGCGCTGTTAATCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGGGGTGCAAGGTATAGCGCTGCAAAAGCTTTGGAAAGTTTATTCTCTGCAGACCATATTAGAAACGCTGAGATTGCTCGCCAAGCTGTTCAACCCTTGGTAGAAATTCTTAGTACCGGTTCAGAAAGGGAGCAGCATGCTGCAATTGCTGCATTGGTTGGGTTACTGAGTGAAAATACATCAAGAGCACTCGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTATAAGATCCTTTCGTCAAATTGTTCAACGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACGATGGCTGCTGCACGATGCATTGAACCACTAGTCTCTCTCCTTGCAACCGAGTTTAGTTCTGCTCATCATTCAGTTGTTCGGGCATTGGATAGGCTTGTTGACGACGAGCAACTGGCTGAATTAGTTGCTGCAAATGGTGCAGTTATTCCTCTTGTTAGTCTACTGTCTAGTAGAAACTATGTACTTCACGAGGCCATTTCCAGAGCTTTGGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAATGGAAATGGTAAAAGCTGGAGCCATTGAAAGAATACTAGACATCTTACATGAAGCACCTGATTTTTTGTGCGCAGCTTTTGCAGAACTGTTGCGTATATTAACCAATAATGCTACCATAGCTAAAGGACCATCGGCCGCTAAAGTTGTTGAACCCTTGTTTTTGTTGTTGACAAGATATGATTTTGGGCCCGACGGACAGCACGGTGCAATGCAGGTTTTGGTTAATATCTTGGAACATCCAAAGTGTCGTGCTGACTATTCATTGACTTCTCACAAAGTTATTGAACCACTTATCCCTTTGCTTGATTCACCGATATCAGTAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTGCTCCTAGAAGAACATCTTCAAAAGGATCCAGTGACACCGAAAGTAATTGCCCCTCTTATAAGAATTCTCGGTTCTGGTATACCTTTATTGCAGCAGCGAGCTCTAAAGGCCCTAGTTAGTATTGCGCTAACATGGCCGAACGAAATTGCCAAAGAGGGTGGTGTTGTTGAGATTTCCAAAGTGATATTGCAAGCTGATCCATCCCTTCCTCATGCTTTATGGGAATCTGCTGCATCTGTCCTGTCAAGTATTCTGCAATTTAGCTCAGAATTCTACTTGGAAGTTCCTGTTGCTGTGTTGGTAAGGTTGCTTCGGTCAGGCTCAGAGAGCACAGTTATCGGTGCGTTAAATGCTCTTCTAGTTTTGGAAAGTGATGATGGAACTAGTGCAGAATCTATGGCTGATAGTGGTGCAATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGAAGTCGCTGCACGACTCTTAGAAGTATTGCTGAACAACGTAAAGATCAGAGAAACAAAAGTTACTAAGTCAGCCATCTTACCGTTATCACAATATCTATTGGACCCACAAACCCAAGCACAGCATGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTTTTCCAGAATGAGGCTCTTGCTCGAACAGGTGATGCAGTTTCTGCGTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCGACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAATCTTGTGATGTACAGTCGACCAAATAGAAGAGCAGTTGCAGAGGCCGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTAATCCTGAAACTTCTGTCCAGGCTGCGATGTTTATTAAACTTCTGTTCTCAAATAATACAATTCAAGAGTACGCTTCTAGCGAAACAGTCAGAGCAATTACTGCCACTATTGAAAAAGATTTATGGGCGAGTGGAACTGTGAACGAGGAATATCTGAAAGCATTAAATTCTCTATTAAGCAACTTCCCACGACTGAGAGCAACCGAACCTGCGACACTTAGTATTCCCCATCTGGTAACATCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCTGCCTTAGATGCACTTTTTCTGCTCAGACAAGCTTGGTCAGCATGCCCTGCTGAAGTTTCAAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCTTTCCTGCAGTACTTAATCCAGTCTGGTCCGCCTCGGTTTCAGGAGAAGGCGGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCGTAAAGCGTGGTAACAATATGAGACAGTCTGTTGGAAACCCTAGTGTGTACTGCAAGATTACTCTTGGCAATAATCCGCCGAGGCTAACAAAGGTGGTCTCAACTGGTCCCAATCCGGAGTGGGAAGAGAGCTTTACATGGTCCTTTGAGAGTCCACCAAAAGGCCAAAAACTACATATTTCTTGCAAAAACAAAAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAAATTGATCGAGTGGTAATGCTCGGAGCCGTAGCTGGTGAGTACACTCTGTTGCCGGCAAGTAAAAGTGGACCACCAAGGAATCTAGAAATTGAATTTCAGTGGTCTAACAAAGCAAATGATACAACAACTGATACAGTTCAACAGTAG 6537 0.4257 MHFHSSKEEALKSLKLATTLSWRHSANNGSSHASTDLERNGDGKAQDSEPPTPHSVMKMGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLMDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLRTGLKAGNVVESLLTGTLKNLSSNAEGFWNATIQAGGVDILVKLLATGQPSTLANVCFLLAAVMMEDASVCSKVLNAEVTKQLLKLLGPGNDDLVRAEAAGALKSLSAQCKEARREIASSNGIPALINATIAPSKEYMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSSTQIADTLGAIASALMIYDNKAESTKPSDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNPILSAKLANSDAKHLLVGLITMASNEVQEELIKALLTLCKSEGSLWRALQGREGIQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESANAVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSELPDSKIYVLDALRSMLCVAPLSDILREGSAAGDAFDTMIMLLSSTKEETQAKSASALAEIFEARKDLRESSVAVKALCSAMKLLNVESESILMESSNCLASIFLSIKENKDVAAVARDALSSLVALANSSILEVAEMAIGAVANLILDIEMAKKVVAEEVILPATRVLNEGTISGKTHAAAAIARLLYSHKVDNAVTDCVDRAGTVLALVSFLDSSVNGSIDTSEALEALVILSRSEESGANIKSACAVLAEFPESLIPIVLCIANSTPTLQDKTIEILSRLCKDQPTVLGDSVISASGCISSIAKRIISSTNVKVKIGGVALLICAAKTNHQRLVEDLNISNLSVNLIKSLVDILISAQSSLGNSGDDDDKESISICRHEKEEANGRESKTGTSIICGVDLAIWLLSILACHDGKNKNAIMKAGAIDAVTDRISNCYSQYSQVDYKEDNSTWICALLLAILYQDRDIIRAHATTKSVPALANLLKSDETENKYFAAQSIASLVCNGNRGTLLSVANSGAAGGLISLLGCADTDIQDLLEMSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGRDCPSNKTIMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSADIRKHDSAFGAVNQLVAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEREQHAAIAALVGLLSENTSRALAVADVEMNAVDVLYKILSSNCSTDLKGDAAELCCALFGNTRIRSTMAAARCIEPLVSLLATEFSSAHHSVVRALDRLVDDEQLAELVAANGAVIPLVSLLSSRNYVLHEAISRALVKLGKDRPACKMEMVKAGAIERILDILHEAPDFLCAAFAELLRILTNNATIAKGPSAAKVVEPLFLLLTRYDFGPDGQHGAMQVLVNILEHPKCRADYSLTSHKVIEPLIPLLDSPISVVQQLAAELLSHLLLEEHLQKDPVTPKVIAPLIRILGSGIPLLQQRALKALVSIALTWPNEIAKEGGVVEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLESDDGTSAESMADSGAIEALLELLRSHQCEEVAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQHARLLATLALGDLFQNEALARTGDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRPNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFIKLLFSNNTIQEYASSETVRAITATIEKDLWASGTVNEEYLKALNSLLSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIVKRGNNMRQSVGNPSVYCKITLGNNPPRLTKVVSTGPNPEWEESFTWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKANDTTTDTVQQ 2178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04991 2178 SUPERFAMILY ARM repeat 1117 1582 IPR016024 -
Trre8g04991 2178 Gene3D - 625 1021 IPR011989 -
Trre8g04991 2178 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 44 2167 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trre8g04991 2178 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2046 2154 IPR035892 -
Trre8g04991 2178 Gene3D - 1382 1663 IPR011989 -
Trre8g04991 2178 Gene3D - 64 429 IPR011989 -
Trre8g04991 2178 MobiDBLite consensus disorder prediction 25 72 - -
Trre8g04991 2178 Coils Coil 312 332 - -
Trre8g04991 2178 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1396 1630 - -
Trre8g04991 2178 Gene3D - 1812 2044 IPR011989 -
Trre8g04991 2178 SUPERFAMILY ARM repeat 676 1079 IPR016024 -
Trre8g04991 2178 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1212 1256 IPR000225 GO:0005515
Trre8g04991 2178 Gene3D C2 domain 2045 2177 IPR035892 -
Trre8g04991 2178 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 593 IPR000225 GO:0005515
Trre8g04991 2178 SMART C2_3c 2047 2143 IPR000008 -
Trre8g04991 2178 Pfam C2 domain 2046 2137 IPR000008 -
Trre8g04991 2178 CDD C2 2048 2138 - -
Trre8g04991 2178 Gene3D - 1696 1811 IPR011989 -
Trre8g04991 2178 Gene3D - 460 621 IPR011989 -
Trre8g04991 2178 SMART arm_5 1414 1454 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 748 786 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 1455 1495 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 1245 1286 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 582 622 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 1873 1913 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 1583 1623 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 151 191 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 326 375 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 1497 1537 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 1328 1368 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 1200 1243 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 283 324 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 540 580 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 109 150 IPR000225 GO:0005515
Trre8g04991 2178 SMART arm_5 1746 1785 IPR000225 GO:0005515
Trre8g04991 2178 SUPERFAMILY ARM repeat 1596 2042 IPR016024 -
Trre8g04991 2178 ProSiteProfiles C2 domain profile. 2027 2144 IPR000008 -
Trre8g04991 2178 SUPERFAMILY ARM repeat 90 409 IPR016024 -
Trre8g04991 2178 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2046 2167 - -
Trre8g04991 2178 Gene3D - 1033 1381 IPR011989 -
Trre8g04991 2178 Pfam Armadillo/beta-catenin-like repeat 540 579 IPR000225 GO:0005515
Trre8g04991 2178 Pfam Armadillo/beta-catenin-like repeat 119 149 IPR000225 GO:0005515
Trre8g04991 2178 SUPERFAMILY ARM repeat 441 786 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04991 Trre-Chr8 52820323 52829986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04991 503 635 U-box Gene Family AT2G23140 40.000 5.63e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04991 - - cam:101494820 3779.18