Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04989 ATGGCACTCTCGTTCTCACTCTCTTCAAGCGTAACCGTTTCTAACCGTTTTCCTTCTTGTTGCATTTCGAAACTGAATAGTAAGATTTGTAATGGGTTCAATAAAGTGTTATGTTCGTCACGGAAGGATAAGAATCCGTTAATTGGAATTGGTTTGGGGTTTGTAACGGCTATGGTTATGGGTTTAACGGCGTTAGATGCCGATGCAACAAGAATTGAATACTATGCTACTGTAGCAGAGCCAACGTGTGAGCTTAATTATGCTAAGTCTGGGCTTGGTTATTGTGATGTTGTTGAGGGTTTTGGTGATGAAGCTCCTCTTGGAGAGCTTATTATTATTCATTATACTGCGAGATTCGGCGATGGGATTGTATTTGATAGTAGTTATAAACGTGGTAGACCGCTCACTATGCGTATTGGGGTTGGGAAGGTAATTAAGGGATTGGATCAGGGGATTTTGGGGGGTGAAGGAGTACCTCCAATGCGGATAGGTGGGAAACGTTCGCTAATGATTCCTCCGTTGTTAGCATATGGCCCTGAACCTGCAGGGTGCTTCTCAGGTGACTGCAATATACCGGGCAATGCTACTCTTCTGTACGATATTAAATTTGTTGGTCTTTATACGGATGAGCAACACATGGATTGA 645 0.4295 MALSFSLSSSVTVSNRFPSCCISKLNSKICNGFNKVLCSSRKDKNPLIGIGLGFVTAMVMGLTALDADATRIEYYATVAEPTCELNYAKSGLGYCDVVEGFGDEAPLGELIIIHYTARFGDGIVFDSSYKRGRPLTMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRSLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYTDEQHMD 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04989 214 FunFam Peptidylprolyl isomerase 80 206 - -
Trre8g04989 214 SUPERFAMILY FKBP-like 87 205 - -
Trre8g04989 214 Gene3D - 80 206 IPR046357 GO:0003755
Trre8g04989 214 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 108 207 IPR001179 GO:0003755
Trre8g04989 214 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 31 209 IPR044183 GO:0009507
Trre8g04989 214 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 105 203 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04989 Trre-Chr8 52805482 52806868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04989 84 208 Calmodulin-binding Proteins AT5G48570 36.508 3.52e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04989 K01802 - gmx:100500547 315.464