Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04974 ATGTCAACAGCTATAAATACATACAATAGCAACAAAAACATTACACATGGTTTCTTAGATCCATTTAATGAAGAACTAATGAAAGCACTTGAGCCTTTTATCAAAAGTGATTATTCAACAATCTCTTCTTCCACACATGAACAATCAAACTTTCCCTCAACTTCTTATTCACCATTTTCACCCAATTACTTCACCTACGAAACCCAAACAAGCTCAATAGGACTCAACCAACTCACCCCATCACAAATCCTTCAAATCCAAACCCAAATTCAAATTCCCCAAAAAAGCCATCTTTCTCAAAAGCCCGTTTCAATGAAGCACTTTTCTACTCCTTCAAAACCAATGAAACTTTACCGTGGAGTTAGACAACGTCATTGGGGAAAATGGGTCGCTGAAATTAGACTCCCAAGAAACCGTACTCGTTTATGGTTAGGTACATTTGAAACTGCAGAGGAAGCAGCTTTTGCTTATGATAACGCAGCTTATAAGCTTAGAGGTGAATTTGCACGACTCAATTTTCCTCACATGAGTCACCATGAAAATTACAATCCTCTCCCTTCTTCTGTTGATTCAAAGCTTCAAGCAATTTGTAAAACTTTAGCCATTTCTCAAAAACAGGGGAAACAGGGGAACGATGAAAAACCATGTTCCTCTGTTCTTGAAGATGTAAAACCGGTTGTTTGTGTTACTGCAAAACCAAAAGATGAATTGGTTTGTCACAAGTTTAATGATTTTAAGGTTGAGAATGAAAAGACAATGATGTTGTCTATGTCTGATGAATGTTCACCTTGTTTGTCATCACCAGAATCTGGTGTTACTTTCTTGGATTTCTCAGATTCTAGCCAGTGGGATGAAGTGGAGAATTTTGGGTTGAAGAAGTACCCTTCTGTTGAAATTGATTGGGAAGCTTTATGA 915 0.3738 MSTAINTYNSNKNITHGFLDPFNEELMKALEPFIKSDYSTISSSTHEQSNFPSTSYSPFSPNYFTYETQTSSIGLNQLTPSQILQIQTQIQIPQKSHLSQKPVSMKHFSTPSKPMKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFETAEEAAFAYDNAAYKLRGEFARLNFPHMSHHENYNPLPSSVDSKLQAICKTLAISQKQGKQGNDEKPCSSVLEDVKPVVCVTAKPKDELVCHKFNDFKVENEKTMMLSMSDECSPCLSSPESGVTFLDFSDSSQWDEVENFGLKKYPSVEIDWEAL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04974 304 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Trre8g04974 304 CDD AP2 116 175 IPR001471 GO:0003700|GO:0006355
Trre8g04974 304 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Trre8g04974 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 304 - -
Trre8g04974 304 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Trre8g04974 304 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Trre8g04974 304 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Trre8g04974 304 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Trre8g04974 304 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Trre8g04974 304 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04974 Trre-Chr8 52698973 52699887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04974 4 304 AP2-EREBP Transcription Factor Family AT4G39780 49.359 9.02e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g04974 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04974 K09286 - gmx:100818839 297.745