Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04970 ATGACTCAACAGAATGTGGTAGTGTCGGACACCAAAACCGGAATCAGCGGCGGTGGAAGTACTGTTACCGTGGCACAAAAGCCACCTGCAGCACCAGGATACATTCCCATTCCAAGGAGGAGAATTTTGAAGAACCTTGAAATCAATGGTGGACAAAGAATCAATACATGGATTGATTCTATGAGAGCTTCTTCACCCACTCATGTCAAATCCACTCCTTCTTTGGCTGAAGAATACAACTCTTGGATTCTTCGCCATCCATCTGCATTAGACATGTTTGAACAAATTATGGATGCTTCAAAGGGAAAACAGATTGTTATGTTTTTGGACTACGACGGTACTCTGTCGCCTATAGTCGATGATCCTGATCGTGCTTTCATGTCTGAATCGATGAGGAAAACGGTTAGACAACTTGCAAGGTGTTTTCCTACTGCAATTGTTACCGGAAGATGCATAGACAAAGTGTACAATTTTGTTCGTTTGGCTGAACTATATTATGCTGGTAGCCATGGCATGGACATTAAAGGTCCAACAAAAGAGTCCAAATACAACAAAAATAAGAAAGCAGAGGAAATTCTTTTTCAACCTGCCAGAGAATTTGTTCCAATGATAAATGAGGTTTATGATCAACTAGTTGAGAAAACAAAATCAACTCCTGGTGCTAGAGTTGAGAATCACAAATTCTGTGCCTCTGTTCATTTTAGATGTGTTGAGGAAAAGAGATGGGTTGAATTAGCAGAGCAAGTAAAATCAGTGATTAAAGAGTACCCTAAGCTTCGTCTTACACAAGGAAGGAAGGTATTGGAGATTCGTCCCGCAATTAAATGGGACAAGGGCAAGGCCTTAGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTATTTATATTGGTGATGATAGAACCGATGAAGATGCATTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGAATTCTAGTCTCTAAATTTCCAAAGGACACTACTGCCTCATACTCCTTACAAGAACCTAATGAGGTTATGGATTTTCTTCAACGTTTAGTTGAATGGAAAAAAGTATCTTCAAGATCACGTTCACGGGTGTAG 1101 0.3987 MTQQNVVVSDTKTGISGGGSTVTVAQKPPAAPGYIPIPRRRILKNLEINGGQRINTWIDSMRASSPTHVKSTPSLAEEYNSWILRHPSALDMFEQIMDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSESMRKTVRQLARCFPTAIVTGRCIDKVYNFVRLAELYYAGSHGMDIKGPTKESKYNKNKKAEEILFQPAREFVPMINEVYDQLVEKTKSTPGARVENHKFCASVHFRCVEEKRWVELAEQVKSVIKEYPKLRLTQGRKVLEIRPAIKWDKGKALEFLLESLGFANCNDVFPIYIGDDRTDEDAFKKLRDRGQGFGILVSKFPKDTTASYSLQEPNEVMDFLQRLVEWKKVSSRSRSRV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04970 366 FunFam Trehalose 6-phosphate phosphatase 105 192 - -
Trre8g04970 366 SUPERFAMILY HAD-like 106 356 IPR036412 -
Trre8g04970 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 35 362 IPR044651 GO:0004805|GO:0005992
Trre8g04970 366 Gene3D - 105 204 IPR023214 -
Trre8g04970 366 Gene3D - 211 365 IPR023214 -
Trre8g04970 366 Pfam Trehalose-phosphatase 108 342 IPR003337 GO:0003824|GO:0005992
Trre8g04970 366 CDD HAD_TPP 106 346 - -
Trre8g04970 366 FunFam Trehalose 6-phosphate phosphatase 203 362 - -
Trre8g04970 366 NCBIfam trehalose-phosphatase 103 353 IPR003337 GO:0003824|GO:0005992
Trre8g04970 366 NCBIfam HAD-IIB family hydrolase 107 318 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04970 Trre-Chr8 52631394 52634146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04970 101 352 Trehalose Biosynthesis Gene Families AT1G70290 27.076 9.99e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04970 K01087 - gmx:100794430 616.69