Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04965 ATGGGGCAAGCAATTGTTCTCCTTGAAGACGACGATCCTAGAAAGCGTAGTCGTTTATGGAAAACTAATGATATTTATGATGTTTTAAGTAAGAAGAAGGGAAAGGGAACAGATGCAATCAAGGGTATATTTCTAGACATGATGGAAATAAAGAAAATACAACTAGATGCTGATACATTCAATGAAATGCATAATCTTAGAATGATCAAGTTCCATAGTGTCAACTGGTGGGATGGCTCAAAGTCAAATGTGACTTGTTCGGATCATTTAAAATTTCCGAATAATTTAAAACTTCTTCATTGGGATTGCTTCCCTCAAAGATCATTGCCGCAAGACTCTTGGCCAGAAGATCTCATTGTGGTTGAAATGCCTCACAGCCATCTTGAACAACTTTGGGAGGGAGATCAGGCTTTACCAAATTTGAAAATACTCAACCTTTTGTATTCTGAGAAGCTGAGAGCAGTACCAGACCTCTCTTTGTGTCCAAATATTGAAGAATTATTGCTTTATGGTTGTTCAAATTTGGAGGAGTTACCTGAAGTGAAGGAGGAGACTATGAAAAATCTAAAAAGGCTAGTGTTAGATGGAACAGCAATAAAAGAACTACCTTCATCCTTAGACCGTTTGGTTGGGCTTGAAGAATTGAGCTTGCAAAGTTGCAGAAAGCTTAATTCTGGTCAAGAACTAGATGCTACTTGTTTGAGTAATATTGAAGAGGAAGCATATATTAAGATCAATGATGATGCATATTGGTCAGTGTTGTTCTGTTATCCAGGAAGTGCAGTTCCTCGCTGGTTCCCTTACTCTTGCAAGGGAAATCCAGTAACTATAAAGAACAATTCTACAAATAGGCTGACTGGTTTAGCTTTGTGTGTTGTTTTGGGACGAGGATGTATTAGAGATGGCACGAGATTTAAGTACAGGATTGGAATTATATCAGATCGGGAAACACACTATTCTAACCACTCTACGGAAGATCACACAGTCCTATGGAAGGGCAAATTATTTGATTCGGCCATTTGGAGATATGGCTTAAGATTTCTCAATGAAGATCACACAGTCCTATGGAAGCACGAGCACTTTCATGCCCAACACTTCTCTTTTGAGTTTACACCAGATGAATCTGACAATGATTGCGTCTACACAGTCTACGTTCGAACCGGTTCAATCTTAAAAGGAGGAACCGATTCAAAGATCGGAGTCAAACTATACGACAAATACGGTTACTACATCTACATCAAGAACCTCGTTGCATGGGGCGGGTTAATGGGTTCGGGTTATAATTACTTCGAACGTAGTAACCTTGATATCTTTAGCGGAAGAGGACCTTGTCTAGACGGACCCGTTTGTGCCGTTAATGTTACATCTGACGGTGACGGCGCACATCACGGTTGGTATTGTAACTACGTCGAAGTTACTAGTACTGGGCCCCACGTATCGTGTTCTCAGGAGCAATTCACGGTGGAACAGTGGCTAGCGACTGATACTAGTCCTTATCAGTTATGGGCCGTGAGGAATCTTTGCCAGTATAAGTTGGATTCGGCCCGGCCCAAAATCGGCCCATCTGTTGTTAACGACGGAAGTGGATCTGATTTTTCTATTTTGAATGCCCACGCTTGA 1620 0.4099 MGQAIVLLEDDDPRKRSRLWKTNDIYDVLSKKKGKGTDAIKGIFLDMMEIKKIQLDADTFNEMHNLRMIKFHSVNWWDGSKSNVTCSDHLKFPNNLKLLHWDCFPQRSLPQDSWPEDLIVVEMPHSHLEQLWEGDQALPNLKILNLLYSEKLRAVPDLSLCPNIEELLLYGCSNLEELPEVKEETMKNLKRLVLDGTAIKELPSSLDRLVGLEELSLQSCRKLNSGQELDATCLSNIEEEAYIKINDDAYWSVLFCYPGSAVPRWFPYSCKGNPVTIKNNSTNRLTGLALCVVLGRGCIRDGTRFKYRIGIISDRETHYSNHSTEDHTVLWKGKLFDSAIWRYGLRFLNEDHTVLWKHEHFHAQHFSFEFTPDESDNDCVYTVYVRTGSILKGGTDSKIGVKLYDKYGYYIYIKNLVAWGGLMGSGYNYFERSNLDIFSGRGPCLDGPVCAVNVTSDGDGAHHGWYCNYVEVTSTGPHVSCSQEQFTVEQWLATDTSPYQLWAVRNLCQYKLDSARPKIGPSVVNDGSGSDFSILNAHA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04965 539 SUPERFAMILY L domain-like 44 237 - -
Trre8g04965 539 PANTHER PLAT DOMAIN-CONTAINING PROTEIN 353 511 - -
Trre8g04965 539 CDD PLAT_plant_stress 379 506 - -
Trre8g04965 539 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 380 497 IPR036392 GO:0005515
Trre8g04965 539 Pfam Leucine Rich Repeat 118 136 IPR011713 -
Trre8g04965 539 Gene3D Ribonuclease Inhibitor 32 239 IPR032675 -
Trre8g04965 539 Gene3D PLAT/LH2 domain 359 498 - -
Trre8g04965 539 ProSiteProfiles PLAT domain profile. 379 506 IPR001024 GO:0005515
Trre8g04965 539 Pfam PLAT/LH2 domain 381 499 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04965 Trre-Chr8 52585314 52588532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04965 2 225 WRKY Transcription Factor Family AT4G12020 32.852 3.47e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04965 - - gmx:100797102 281.952