Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04961 ATGTCTCATTCTGATCCAAAGTATGAAGTGTTCCTCAGCTTTAGAGGAGAGGATACTCGTAAAAAGTTCACCAGTCATGTTAATGCAGAATTGAATAGGAAAAATATTAAAACATTCATAGATAATAAACTTGAGAGAGGTGATGAGATTAACCCATCGCTCAACAAAGCAATTGAAGAATCAAAGATTTATTTGGTCATTTTGTCAAAACACTATGCTTCTTCCCGTTGGTGCTTAGATGAACTCATAAAGATACTGGAATATAAGAAGGAATATGGAAGGGAAGTGACACCTGTGTTCTATGAAGTGGATCCAACAGATGTTAGGCATCAGACAGGGAGTTATGGAAAAGATTTTTTGGAGCATCATAAAGACCGACCCAAGGACAAAATAGATGCTTGGAAGGTTGCTCTAACTCATGTAGGCGAGCTCTCAGGCATTGTTTCACAAAATTTCAGCCTAGAAAGCACCCTTGTTGAAAAGATTGCAGAAGTTATTTTGGAAAAATTGAATCGTCATGTCTCAAGTGATTATGATAAAGGATTGACTGGAATGGACAAGCATATTAATCAAATCCAACCCAAGTTGCAACTCGAGTCGCCGACTGTTCGTATCATAGGAATATGGGGCATGGGAGGGATAGGGAAAACAACAATTGCAAATGCAATCTTTGAAAAACTCAAAATTCATTTCAGTTCCAGCAGCAAGGTTCTAAATGTTCAAGAACAAATAGAAAGATCTGGAGTAGACCATGTAAAAAGAGAATACTTAAAAAAACTTCTAGTTCTAAAGGAAGACATTACATCCTCTAACTATAATTTTTCATATCAAAGGCTGAAACGAACAAAAGTTCTTCTTTTTCTTGATGATGTGAAAGATTATGATCAAGATTTAATTGGAACACATGGTAACTTTGGACAGGGGAGTAGAATCATTGTGACTAGTAGAGACAAGCATGTGCTTGAGAATGCCAATGCTGATGAAATATATAAAGTTAGTGAAATGGATGATCAAGATTCGCTAGAACTCTTCTGTTCATTTGCCTTTAAACAAAAACAACCGATTGAATCTTATGTGAGCTTAACAGAAAAGTTTTTAATATATAGTGATGGGCATCCTTTAGCTCTCAAAGTTTTGGGTTCAATGCTTTGTGGCAAACCAAAAGAAGTATGGAAAAGTCAGCTGCAAAAGCTCGAAAAGCTTCCCAATCAAGATATTTCAAAAAAGTTGAAGTTAAGTTATGATGGACTTGACAAGGAACAAAAAGATATATTTCTTGACATAGCTTGTTTTCATATAGGAGAAGATCACTTCTATGTAGAAAGGATGTTGGATGGTTGTGGTTATTCTGCTCACATTGGAATGGAAGTTCTCAAAGATAGGTGCCTTATATTTATTTCAGATGGTGATATTTGGATGCATGATCTAATAAAAGAAATGGGGCAAGCAATTGTTCTCCTTGAAGACGATCCTAGAAAGCGTAGTCGATTATGGAAAACTAATGATATTTATGATGTTTTAAGTAAGAAGAAGGGAAAGGGAACAGATGCAATCAAGGGTATATTTCTAGACATGATGGAAATAAAGAAAATACAACTAGATGCTGATACATTCAATGAAATGCATAATCTTAGAATGATCCAGTTCTTCCGTAGTGGCAGCAATGAGTCAAATGTGACCTGTTCGGATGATTTAAAATTTCCGAATAATTTAAAACTTCTTCATTGGCATGGCTTCCCTCAAAGATCATTGCAGCAAAACTCTTGGCCAGAAAATCTCATTAGCCTTCGAATGCGTAACAGCCATCTTGAACAACTTTGGGAGGGAGATCTGGCTTTACCAAATTTGAAAATACTTGACCTTTCGTATTCTGAGAAGCTGAGAGCAGTACCAGACCTCTCTTTGTGTCCAAATATTGAAGAAATAAAGCTTTATGGTTGTTCAAATTTGGAGGAGTTACCTGAACTGGAGGAGGAGACTATGAAAAATCTAAAAAGGCTAGTGTTAGATGGAACAGCAATAAAAGAACTACCTTCATCCTTAGACCGTTTGGTTGGGCTTGAAGAATTGAGCTTGCTGGGTTGCAGAAAGCTTAAGACTATTCCATCTTCCATTGGAAATCTCAGTAAACTCCTCAACTTAGACCTTGCCTGTTGTTCAAATTTGGAGGAGTTACCTGAAATCATGGAGACTATGGAAAATTTAAAAGTGCTCGCCTTAGACGAAACATCAATAAAAGAACTACCTTCATCCTTACACCATTTGGTCGGGCTTGTAGAATTGAGCTTGGAAAGTTGCAGAAAGCTAAAGACTATTCCATCTTCCATTGGAAATCTCAGTAAACTCCTCAAGTTAAACCTTGCCGAGTGTGAATCACTTGAGACTTTTCCAGAAATACCAAATTACTGCTTGTCATCCTTGACTGAACTTTGGCTACAGGGAAGCAGTATTGTGAACCTTCCTGAGAGTATGGCTCATCTCTCAAGTTTGAAATTACTTTATTTAACCAATTGCAAATTGCTTGAATGTGTTCCAAAGCTTCCACCAAATCTAAGCGAAATTTGGGCATTAGATTGCCCTTCCATTAAGAGAATGATGCTAAGTTCAAGGTCTGATTCTGAAGAAGGTACCTTCCAATTTTATCTGACCAATAGTCAAGAACTAGATGCCACTTCTTGGAGTAATATTCGAGAGGAAGCATGTATTAAGATCAATGATCACGCATATCGGTCAGTGTTCTTCTGTTTTCCAGGGAGTGCAGTTCCTGACTGGTTCCTTTACAGTTGCAAGGGACATTCAGTAACTGTGAAAGAAGTCTCTCCAAATTTGTGCAGTAAAAATAGGCTTATTGGTTTTGCTCTGTGTGCTATTTGGAGACCAGGATATCATGGAGAACCTAAATACAAATTTGGATTTACATCAGATGGTAAAATATACTCTTCTGACCATAATATACCTGATATATTTGGCACTTTGAATTTGGATCACACACTCCTATGGAAGCATCAATTAGACTTGGAAACAATTGGCAACAAGCTCTTTCATGCCCAAAACTTCACTTTTGAGTTTCCAGCAGATGTCAAAGTGAAAGAATGTGGAATATGTCCTCTGTATACCAAAAGAATTGATGATAATAGACTGACCAAAAGAAACAAGTGGGAGCAAAGCTGCAGAATAATTTAG 3183 0.3701 MSHSDPKYEVFLSFRGEDTRKKFTSHVNAELNRKNIKTFIDNKLERGDEINPSLNKAIEESKIYLVILSKHYASSRWCLDELIKILEYKKEYGREVTPVFYEVDPTDVRHQTGSYGKDFLEHHKDRPKDKIDAWKVALTHVGELSGIVSQNFSLESTLVEKIAEVILEKLNRHVSSDYDKGLTGMDKHINQIQPKLQLESPTVRIIGIWGMGGIGKTTIANAIFEKLKIHFSSSSKVLNVQEQIERSGVDHVKREYLKKLLVLKEDITSSNYNFSYQRLKRTKVLLFLDDVKDYDQDLIGTHGNFGQGSRIIVTSRDKHVLENANADEIYKVSEMDDQDSLELFCSFAFKQKQPIESYVSLTEKFLIYSDGHPLALKVLGSMLCGKPKEVWKSQLQKLEKLPNQDISKKLKLSYDGLDKEQKDIFLDIACFHIGEDHFYVERMLDGCGYSAHIGMEVLKDRCLIFISDGDIWMHDLIKEMGQAIVLLEDDPRKRSRLWKTNDIYDVLSKKKGKGTDAIKGIFLDMMEIKKIQLDADTFNEMHNLRMIQFFRSGSNESNVTCSDDLKFPNNLKLLHWHGFPQRSLQQNSWPENLISLRMRNSHLEQLWEGDLALPNLKILDLSYSEKLRAVPDLSLCPNIEEIKLYGCSNLEELPELEEETMKNLKRLVLDGTAIKELPSSLDRLVGLEELSLLGCRKLKTIPSSIGNLSKLLNLDLACCSNLEELPEIMETMENLKVLALDETSIKELPSSLHHLVGLVELSLESCRKLKTIPSSIGNLSKLLKLNLAECESLETFPEIPNYCLSSLTELWLQGSSIVNLPESMAHLSSLKLLYLTNCKLLECVPKLPPNLSEIWALDCPSIKRMMLSSRSDSEEGTFQFYLTNSQELDATSWSNIREEACIKINDHAYRSVFFCFPGSAVPDWFLYSCKGHSVTVKEVSPNLCSKNRLIGFALCAIWRPGYHGEPKYKFGFTSDGKIYSSDHNIPDIFGTLNLDHTLLWKHQLDLETIGNKLFHAQNFTFEFPADVKVKECGICPLYTKRIDDNRLTKRNKWEQSCRII 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04961 1060 Gene3D Ribonuclease Inhibitor 658 869 IPR032675 -
Trre8g04961 1060 Pfam TIR domain 7 181 IPR000157 GO:0007165
Trre8g04961 1060 SUPERFAMILY L domain-like 538 890 - -
Trre8g04961 1060 SMART LRR_typ_2 804 827 IPR003591 -
Trre8g04961 1060 SMART LRR_typ_2 613 637 IPR003591 -
Trre8g04961 1060 SMART LRR_typ_2 661 684 IPR003591 -
Trre8g04961 1060 SMART LRR_typ_2 755 779 IPR003591 -
Trre8g04961 1060 SMART LRR_typ_2 732 754 IPR003591 -
Trre8g04961 1060 Pfam Leucine Rich Repeat 592 609 IPR011713 -
Trre8g04961 1060 Gene3D - 173 332 IPR027417 -
Trre8g04961 1060 SMART till_3 7 144 IPR000157 GO:0007165
Trre8g04961 1060 Pfam NB-ARC domain 186 414 IPR002182 GO:0043531
Trre8g04961 1060 Gene3D - 334 418 IPR042197 -
Trre8g04961 1060 Gene3D Ribonuclease Inhibitor 501 657 IPR032675 -
Trre8g04961 1060 SUPERFAMILY "Winged helix" DNA-binding domain 406 507 IPR036390 -
Trre8g04961 1060 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 146 IPR035897 -
Trre8g04961 1060 Gene3D - 2 172 IPR035897 -
Trre8g04961 1060 ProSiteProfiles TIR domain profile. 6 170 IPR000157 GO:0007165
Trre8g04961 1060 PRINTS Disease resistance protein signature 611 627 - -
Trre8g04961 1060 PRINTS Disease resistance protein signature 205 220 - -
Trre8g04961 1060 PRINTS Disease resistance protein signature 278 292 - -
Trre8g04961 1060 PRINTS Disease resistance protein signature 369 383 - -
Trre8g04961 1060 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 727 IPR044974 GO:0006952
Trre8g04961 1060 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 172 - -
Trre8g04961 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 428 IPR027417 -
Trre8g04961 1060 Pfam C-JID domain 916 1041 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04961 Trre-Chr8 52536286 52548813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04961 4 874 WRKY Transcription Factor Family AT4G12020 33.221 3.61e-109 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04961 - - tpra:123916959 845.499