Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04960 ATGTCTGATTTAAAGCATGAACAACGATTTGGCGGCAAAGTGGACGTGTGGAAGGCTGCTCTAACCCAAGTAGCTGGACTCTCAGGCTGGGATTCACAAGTAACCAGAGAAGAAAATACACTTGTTACAGGGATTGGGAAAGATATTTTGAAAAAATTGAATCATCCTGGAAAACGTAGCCGATTATGGAAGTCCGACGATATTTATAAAGTTTTCAAAAAGGACAAGGGAAAGGGAACAGATGCAATCCAGTGTATATTCCTAAACATGGATGAAGTAAAGGAAGTTCAACTACATGCTGATACATTTAAGAAAATGCACAATCTTAGAATGATCAAGTTCTATTCTGAATTTGAGGATAATCAGCTGAATTGGACCTTTCATGGGTTTCTTGAGAGTTTTCCGAATGATTTAAAATTTCTTCGTTGGGATGGCTTCCCTCATAGATCTTTGCCGCAAAACTTTTGTCCAGAAAATCTTGTCACTCTTGAGATGTGTTATAGCCATCTTGAATTACTTTGGGAGGGGGATCAGGCTTTACCAAATTTGAAAAAGCTTCAGCTTAGCCATTCTCGGAAGCTAAAAAGACTGCCAGATCTCTCTTTATGTTCAAATATTGAAGAAGTAGTTCTTAGAGGTTGTGTAAGTTTGACAGAAGTTTACTCTTCTAGCTTCCTCGACAATCTTAACTGGTTACGTTTAGATGGTTGCATCAATCTTGAGAGGTTAGATATATGTAGCAATATTTTGTGGACATCATCTGGATTAGTTGCTCTCGGTGGTTGTCACAACCTTCAAACGCTTTTAATCAATTGTAAAACTGATGTGCTTCAATCAAACAGTTGGACCCCCTTTAATCAAGACATATCAGTAAGCATTTTTGATGGAGTGATATTAAAGAATTATGGTGCAGGGGGTTACGAGATTTGGAAACTTTATCCATATAGCTTTACAGGTATAAATGAGTTTTGTTGGCTAGATGTTTCGAATTGTAGATCCATAACCTGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAAGACTTTCTCTCAGTGGTTGCTTAAAGTTGGAGGAATTACCTGAAATCGAGGAGACTATGGAAAATCTAAAAATGCTCATCTTAAACAAAACAGCAATAACAGAACTACCTTCATCCTTACACCTTTTGGTCAAGCTTGAAGAATTGAGCTTGCAAAGTTGCACAAAACTTAAGATTATTCCACCTTCCATTGGAAATCTCAGTAAACTCCTCAAGTTAGACATTGCATATTGTGTATCACTTGAAACTTTTCCATGCAGCATATTCAAATTGAAGTTGAGAGAACTCAATTTTCAGGGTTGCTCAATGCTTAGGACATTTCCAGAGATCTTGGAGCCTGCAGAAAGTTTTAAACACATTAACTTAACACGAACAGCAATAAAACAACTACCTCATTCCTTGCAACTTTTACTCCAACTTGAAGAATTGACCTTGCGAGGTTGCACAAAGCTCAAGACTATTCCATCTTCCATTGGAAACCTCAGCAAACTCCTCAAGTTAGACTTTGCCTATTGTGTATCACTTGAAACTTTTCCATGCACAATATTCAAATTGAAGTTAAGAGAACTCGATTTCGAGGGTTGCTCAAGGCTTAGGACATTTTCACGGATCTTGGAGCTTGCAGAAAGTTTTAAACACATTAACTTAACACGAACAGCAATTAAAAAACTACCTCCATCCTTGCAACTTTTGTTCCAACTTGAAGTATTGAGGTTGCGACGTTGCACAATGCTCAAGACTATTCCATCTTCCATTGGAAATCTCAGCAAACTCCTAAAGTTAGACCTTGCATATTGTGTATCACTTGAAACATTTCCATGCAGCATATTCAAATTAAAGTTGAGAGAACTCGATTTCGAGAGTTGCCATATGCTTAGGACATTTCCAGAGATCTTAGAGCCTGCAGAAAGTTTTACTCACATTAACTTATCACAAACAGCAATTGGAGAACTACCTCCATCCTTGGAACTTTTGTTCCAGCTTGAAGAATTGAGCTTGCGAAGTTGCACAAAGCTCAAGACTATTCCATCTTCCATTGGGAATCTCAGCAAACTCCTAAAGTTAGACCTTGCATATTGTGTATCACTTGAAACATTTCCATGCAGGATATTCAAATTAAAGTTGAGAGAACTCGATTTCGAGAGTTGCCATATGCTTAGGACATTTCTAGAGATCTTAGAGCCTGCAGAAAGTTTTACTCACATTAACTTATCACGAACACCAATTAAAGAACTACCTTCATCCTTGCAACTTTTGTTACAACTTGAAGAATTGAGGATGCGAGGTTGCAAAAAGCTCAAGACTATTCCATCTTCCATTGGGAATCTCAGCAAACTCCTCAAGTTAGACCTTGCATATTGTGTATCACTTGAAACATTTCCATGCAGCATATTCAAATTAAAGTTTAGAGAACTCGATTTCGAGGGTTGCCATATGCTTAGGACATTTCCAGAGATCTTAGAGCCTGCAGAAAGTTTTACTCACATTAACTTATCACGAACAGCAATTAAAGAACTACCTCCATCCTTGCAACTTTTGTTCCAGCTTGAAGAATTGAGGATGCGAGGTTGCAAAAAGCTCAAGACTATTCCATCTTCCATTGGAAATCTCAGTAGACTAATCAAGTTAGAACTTGCCCATTGTGTATCACTTAAAACTTTTCCATGCACAATATTCAAATTGAAGTTAAGAGAACTCGATTTCGAGGGTTGCTCAAAGCTTAAGAAATTTTCAGAGATCCTAGAGCCTGCAGAAAGTTTTACTCACATTAACTTATCACGAACAGCAATTGAAGAACTACCTCCATCCTTGCAACTTTTGTTCCAGCTTGAAGAATTGAGGATGCGAGGTTGCAAAAAGCTCAAGACTATCCCATCTTCCATTGGAAATCTCAGTAATCTCCTCAAGTTAGAACTTGCCTATTGTGTATCACTTGAAACTTTTCCATGCAGCATATTCAAATTGAAGTTAAGAGAACTCGATTTCGAGGGTTGCTCAATGCTTAAGAAATTTCCAGAGATCCTAGAGCCTGCAGAAAGTTTTACTCACATTAACTTATCACAAACAGCAATTGAAAAACTACCTCCATCCTTGCAACTTTTGTTCCAGCTTGAAGAATTGAGGATGCGAGGTTGCAAAAAGCTCAAGACTATCCCATCTTCCATTGGAAATCTCAGTAATCTCCTCAAGTTAGAACTTGCCTATTGTGTATCACTTGAAACTTTTCCATGCAGCATATTCAAATTGAAGTTAAAAGAACTCGATTTTGAGGGTTGCTCAATGCTTAGAACATTTCCAGAGATCTTAGAGCCTGCAGAAAGTTTTACTCACATTAACTTATCACAAACAGCAATTATAGAACTACCTCCATCCTTGCAACTTTTGTTCCAACTTGAAGAATTGAGCTTGCGACGTTGCACAAAGCTCAAGACTATTCCATCTTCCATTGGAAATCTCTGCAAACTCCTAAAGTTAGACCTTGCCTATTGTGTATCTCTTGAAACTTTTCCGTTCAGCATATTCAAATTGAAGTTAAGAGAATTCGATTTTGACGGTTGCTCAATGCTTAGGACCTTTCCAGAATCTAGTAGCCACCAGTCTGATCCCGAAGAAGGTACTTTGAAATTTCATCTGACCAATAGTCAAGAACTAGATGCTACTTCTTTGAGTAATATTGGAGAGGAAGCACATATTAAGATCAATGATGATGCATATTGGTCGGTGTTCTTCCGTTTTCCAGGGAGTGCAGTTCCTCGCTGGTTCCATTACTATTGCAACAAGGGACATTCAGTAACTATGAGAAAAGTTTCTCCAAATTTGTTCAGTAAAAATATGCTAATAGGTTTCAGTCTGTGTGCTGTTTTGGATGACATGAGAACAAGATTTTCTGGATTAAGGTACAATTTTAGATTTATATCAGATGGTGAAATATACTCTTATGACCACTATATGCCTGTCCACATTTTGAATGGGAATAGTCCTGCTGATATATTTCTCAAGCTAGATCACACATTCCTATGGAAGCATCAATTAGACTTAAAAACAATTGGCAACAAGCTCTTTCATGCCCACAGCTTCACTTTTGAGTTTCAATCAGATTTCAAAGTGAAAGAATTTGGAATGTTTCCTGTGTATACCAAAAGAATTGATGATAATAGACTGACCAAAAGAAGAAAAAAAAATTGA 4230 0.3752 MSDLKHEQRFGGKVDVWKAALTQVAGLSGWDSQVTREENTLVTGIGKDILKKLNHPGKRSRLWKSDDIYKVFKKDKGKGTDAIQCIFLNMDEVKEVQLHADTFKKMHNLRMIKFYSEFEDNQLNWTFHGFLESFPNDLKFLRWDGFPHRSLPQNFCPENLVTLEMCYSHLELLWEGDQALPNLKKLQLSHSRKLKRLPDLSLCSNIEEVVLRGCVSLTEVYSSSFLDNLNWLRLDGCINLERLDICSNILWTSSGLVALGGCHNLQTLLINCKTDVLQSNSWTPFNQDISVSIFDGVILKNYGAGGYEIWKLYPYSFTGINEFCWLDVSNCRSITCLPAELLNLKFLTRLSLSGCLKLEELPEIEETMENLKMLILNKTAITELPSSLHLLVKLEELSLQSCTKLKIIPPSIGNLSKLLKLDIAYCVSLETFPCSIFKLKLRELNFQGCSMLRTFPEILEPAESFKHINLTRTAIKQLPHSLQLLLQLEELTLRGCTKLKTIPSSIGNLSKLLKLDFAYCVSLETFPCTIFKLKLRELDFEGCSRLRTFSRILELAESFKHINLTRTAIKKLPPSLQLLFQLEVLRLRRCTMLKTIPSSIGNLSKLLKLDLAYCVSLETFPCSIFKLKLRELDFESCHMLRTFPEILEPAESFTHINLSQTAIGELPPSLELLFQLEELSLRSCTKLKTIPSSIGNLSKLLKLDLAYCVSLETFPCRIFKLKLRELDFESCHMLRTFLEILEPAESFTHINLSRTPIKELPSSLQLLLQLEELRMRGCKKLKTIPSSIGNLSKLLKLDLAYCVSLETFPCSIFKLKFRELDFEGCHMLRTFPEILEPAESFTHINLSRTAIKELPPSLQLLFQLEELRMRGCKKLKTIPSSIGNLSRLIKLELAHCVSLKTFPCTIFKLKLRELDFEGCSKLKKFSEILEPAESFTHINLSRTAIEELPPSLQLLFQLEELRMRGCKKLKTIPSSIGNLSNLLKLELAYCVSLETFPCSIFKLKLRELDFEGCSMLKKFPEILEPAESFTHINLSQTAIEKLPPSLQLLFQLEELRMRGCKKLKTIPSSIGNLSNLLKLELAYCVSLETFPCSIFKLKLKELDFEGCSMLRTFPEILEPAESFTHINLSQTAIIELPPSLQLLFQLEELSLRRCTKLKTIPSSIGNLCKLLKLDLAYCVSLETFPFSIFKLKLREFDFDGCSMLRTFPESSSHQSDPEEGTLKFHLTNSQELDATSLSNIGEEAHIKINDDAYWSVFFRFPGSAVPRWFHYYCNKGHSVTMRKVSPNLFSKNMLIGFSLCAVLDDMRTRFSGLRYNFRFISDGEIYSYDHYMPVHILNGNSPADIFLKLDHTFLWKHQLDLKTIGNKLFHAHSFTFEFQSDFKVKEFGMFPVYTKRIDDNRLTKRRKKN 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04960 1409 SUPERFAMILY L domain-like 1029 1233 - -
Trre8g04960 1409 Gene3D Ribonuclease Inhibitor 79 294 IPR032675 -
Trre8g04960 1409 Gene3D Ribonuclease Inhibitor 1027 1222 IPR032675 -
Trre8g04960 1409 Gene3D Ribonuclease Inhibitor 820 1026 IPR032675 -
Trre8g04960 1409 SUPERFAMILY L domain-like 628 815 - -
Trre8g04960 1409 Pfam C-JID domain 1260 1396 IPR045344 -
Trre8g04960 1409 SUPERFAMILY RNI-like 138 362 - -
Trre8g04960 1409 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 816 928 - -
Trre8g04960 1409 Gene3D Ribonuclease Inhibitor 628 818 IPR032675 -
Trre8g04960 1409 Gene3D Ribonuclease Inhibitor 299 627 IPR032675 -
Trre8g04960 1409 Gene3D - 3 58 IPR035897 -
Trre8g04960 1409 SUPERFAMILY L domain-like 747 1095 - -
Trre8g04960 1409 SUPERFAMILY L domain-like 315 625 - -
Trre8g04960 1409 Pfam Leucine Rich Repeat 159 178 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04960 Trre-Chr8 52526095 52532634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04960 769 961 WRKY Transcription Factor Family AT4G12020 33.505 4.34e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04960 - - tpra:123916959 617.846