Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04957 ATGTCTCATCCAACAACTCCAAAGCATCAGAGACAGAGTTATGCAGATGATTTAGTTAAGCATCATCAACGATTTGGCGGCAAAGTGGATGCGTGGAAGGCTGCTCTAACCCAGGTAGCTGGACTCTCAGGCTGGGATTCACATGTAACAAGACTTGAAAGCACACTTGTTACAGAGATTGTGAAAGACATTGCGAAAAAATTGAAATGTTGTGTCTCAAGTGATTATGAAGGAATGACAGGAATTGACAACCATATTGAAAGTATTCAATCCTTGTTGCTCCTCGAGTCGCCGACTGTTCGAATCATAGGAATATGGGGCATGGGAGGGATAGGCAAAACAACAATTACCAATGCAATCTTTGAAAAACTTGCTACTCAGTTTAGTTCCAAAAGCATCATTCGAAATGTTCAACAAGAAATAGAAAGAGTTGGACTATCCCATGTAAAAAAAGAATACTTATCACAACTTCTAGATGAAAGAATTAAATCCTCTGAATCCAATTCTTACGATCAAAGGCTGAAACGGACAAAGGGGAGTAGAATCATTGTGACTAGTAGAGATAGGCAAGTGCTTGAGAATTCCAATGCTCACGAAATATATCAAGTTAGAGAAATGGATGATCAAGATTCTCTACAACTGTTCTGTTTATTTGCTTTTAAACAAAATCATCCAAAAGAATCTTTTGTGAGCTTAACAGAAAAGGTTTTAGATTATGCTAAAGGGCTCCCATTAGCTCTCAAAGTTTTGGGTTCAATGCTTTATGGCAAACCAAATGAAGTATGGGAAAGTCAGCTGCAAAAGCTCGAAAAGCTTCCCGATCATGAAATTTTTAGATTGTTGAAATTAAGTTATGATGGACTTGATGACGAACAAAAAAATATATTTCTTGACATAGCTTGTTTCCATATAGGAGAATTGGAGAAAGTTGTAGCACAAATGTTGGATTGTTGTGGTTTCTCCACTCGCATTGGATTGGATGTTCTTGAAGATAGGTGCCTTATATCTATTTCAGAAGGTGAAGTTTGGATGCATGATCTAATACGAGATATGGGGCGTCAAATTGTTATGCTTCAATGTGTTGATAATCCTGGAAAACGTAGTCGATTATGGAAGGCTAGTGAAATTGACGATGTTTTAAGCAAGGGAAAGGGAACAGATGCAATCCGGTGTATATTCCTAAACATGGATGAAATATGGGAAAAGAAAGTTCAACTACATGTTGATACATTTAAGAAAATGCATAATCTTAGAATGATCAAGTTCCACAATCCCTTTACGATAAATAAGTCAAATGTAACCTTTCATGGATTCCTGAAGAGTTTTCCTAATGATTTAAAATTTCTTCAATGGGATGGCTACCCTCAAAGATCCTTGCCACAAGACTTTTGCCCAGAAAATCTTGTTACACTTGATATGTCTTATAGCCATCTTGAACAATTTTGGAAGGGGGATCAGGCTTTACCAAGTTTGAAAAGGCTTGACCTTAGTTATTCTAAGAAGCTGATAGCAGTTCCAGACCTCTCTTTCACTCCAAATATTGAAGAAGTAATTCTTAGTGGTTGTGTAAGTTTGACACAAGTTTACTCCTCTGGCTTCCTCAACAATCTTAACTTCTTACTTTTAGAAGGTTGTACCGAACTCAAGAGTTTAAATATTCGTAGCAATATTCTATCAAGATCATCTGGATTAGTTGCTCTCCGTGATTGTCATAAACTTGAAACACTTTTAATCAGCAGTAGAATTGATCATGTGGTTCAATCATATAAAAAATTTTATGGATATTCTAAGGTCGGAGATATGCACAAACTTTGTGATGAAATGGAAATAAAAATAGAGTTGAATGATGAAGGGGATTACGAGATTTGTGGATCATTTTCAGATACTCTTTCAGGAAAAAGAATCAATGATTTTTGTTGGTTAGATATTTCCAAATGTGAGTCCCTATCATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAGGACTTTCTCTTCATGGTTGTTTAAATTTGGAGTTACCTGAAATCAAGGAGACTATGGAAAATTTAAAAGTGCTCATCTTAGACGAAACATCAATAAAAGAACTACCTTCATCCTTGTACAATTTAGTTGGGCTTGAAAAATTGAGCTTGCAAAGTTGCACAAAGCTTAAGACTATTCCATCTTCCATTGGAAACTTCGGTAAACTCCTCAAGTTAAACCTTACCTATTGTGAATCACTTGAAACTTTTCCGAGCAGCATTTTCAAATTGAAGTTGGCAAAACTCAATTTAGAAGGTTGCTCGATGCTTGCGACCTTTCCAGAGATCTTGGAGCCTGCAGAAAGTTTTACTTGCATTGACTTAACAGACACAGCAATAAAAGAACTACCTTCATCCCTGCACCATTTGGTCGGGCTTAAAGAATTAAGCTTGCAAAGTTGCACAAAGCTTAAGACTATTCCTTCTTCTATTGGAAACCTCAGTAAACTCCTCAAGTTAAAACTTGCCTACTGTGAGTCACTTGAAACTTTTCCGAGCAGCATTTTCAAATTGAAGTTGACAAAACTTGATTTCCAGGGTTGCTCAATGTTCAGGACCTTTCCTGAAATACCAAATGACATTGGCCGCTTGTCATCCTTGACTGAACTTTCATTGAAAGGAAGTAGTATTGTGAACCTTCCTGAGAGTCTGGCTCATCTATCAAGTTTGAAATCACTTAATTTAAGTGATTGCAAATTGCTTGAATCTGTACCAAAGCTTCCACCAAATCTAAAGAAAGTTTTTGCATTTGATTGCCCTTCCATTAAGAGAATGGTGCTAAATTCAAGGTCTGATTATGAAGAAGATACCTTCAAATTTCATCTGACCAATAGTCAAGAACTAGATGCTACTTCTTTGAGGAATATTGAAGAGGAAGCATATATTAAGATCAACGATGATGCATATAGGTCAGTGATCTTCTGTTTTCCAGGAAGTGCTGTTCCTGATTGGTTCCCTCACCGTTGCCAGGGACATTCAATAACTATAAGAAACGATGATTTAAATTTGTACGAGAGAAACAGGCTTATTGGTTTCGCTCTATGTGTGGTTTTGGGAGATGATTTTCCATACAAATTCTTTTGTCTCAATCCCAGAGTACCGTATTACTATGGTGTTGGCTTTAGATACAAATTAAAATTTGAATCTGATGGTCAAACATACTTTCATCCCGACAACAAGCTTGAAGTTGAATATTATGATTGGAAAGATCGATATAGAATATTTGCCCAACATCACACATTCCTGTGGAAGTATGAATTGGACTTGCCAAGAATTGATGTCGAGACTATGACTTTTGAGATCGTAGATGAGCATCATCGTCCCTTAAGTTTTCCAACAACCATGACAGTGAAAGAATGTGGAATATGTCCTTTGTATAGCAAAGAAAATGATGATGGTGATGATGATGGTGGTGGTGACAGCATTAATGAAGAACCAAGTAGGGATGCAGTGTGTTTGCTGGATCTCTTCCCAAGTGGGGATGTAGTGTGTTCGGTGTACGGAACACACCATATGTACCCCTCCTCAAGTGACAACTACACACAAAATAAAAGAAGAAAAAAATAA 3594 0.3692 MSHPTTPKHQRQSYADDLVKHHQRFGGKVDAWKAALTQVAGLSGWDSHVTRLESTLVTEIVKDIAKKLKCCVSSDYEGMTGIDNHIESIQSLLLLESPTVRIIGIWGMGGIGKTTITNAIFEKLATQFSSKSIIRNVQQEIERVGLSHVKKEYLSQLLDERIKSSESNSYDQRLKRTKGSRIIVTSRDRQVLENSNAHEIYQVREMDDQDSLQLFCLFAFKQNHPKESFVSLTEKVLDYAKGLPLALKVLGSMLYGKPNEVWESQLQKLEKLPDHEIFRLLKLSYDGLDDEQKNIFLDIACFHIGELEKVVAQMLDCCGFSTRIGLDVLEDRCLISISEGEVWMHDLIRDMGRQIVMLQCVDNPGKRSRLWKASEIDDVLSKGKGTDAIRCIFLNMDEIWEKKVQLHVDTFKKMHNLRMIKFHNPFTINKSNVTFHGFLKSFPNDLKFLQWDGYPQRSLPQDFCPENLVTLDMSYSHLEQFWKGDQALPSLKRLDLSYSKKLIAVPDLSFTPNIEEVILSGCVSLTQVYSSGFLNNLNFLLLEGCTELKSLNIRSNILSRSSGLVALRDCHKLETLLISSRIDHVVQSYKKFYGYSKVGDMHKLCDEMEIKIELNDEGDYEICGSFSDTLSGKRINDFCWLDISKCESLSCLPAELLNLKFLTGLSLHGCLNLELPEIKETMENLKVLILDETSIKELPSSLYNLVGLEKLSLQSCTKLKTIPSSIGNFGKLLKLNLTYCESLETFPSSIFKLKLAKLNLEGCSMLATFPEILEPAESFTCIDLTDTAIKELPSSLHHLVGLKELSLQSCTKLKTIPSSIGNLSKLLKLKLAYCESLETFPSSIFKLKLTKLDFQGCSMFRTFPEIPNDIGRLSSLTELSLKGSSIVNLPESLAHLSSLKSLNLSDCKLLESVPKLPPNLKKVFAFDCPSIKRMVLNSRSDYEEDTFKFHLTNSQELDATSLRNIEEEAYIKINDDAYRSVIFCFPGSAVPDWFPHRCQGHSITIRNDDLNLYERNRLIGFALCVVLGDDFPYKFFCLNPRVPYYYGVGFRYKLKFESDGQTYFHPDNKLEVEYYDWKDRYRIFAQHHTFLWKYELDLPRIDVETMTFEIVDEHHRPLSFPTTMTVKECGICPLYSKENDDGDDDGGGDSINEEPSRDAVCLLDLFPSGDVVCSVYGTHHMYPSSSDNYTQNKRRKK 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04957 1197 SUPERFAMILY L domain-like 423 725 - -
Trre8g04957 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 299 IPR027417 -
Trre8g04957 1197 Gene3D - 70 178 IPR027417 -
Trre8g04957 1197 PRINTS Disease resistance protein signature 102 117 - -
Trre8g04957 1197 PRINTS Disease resistance protein signature 240 254 - -
Trre8g04957 1197 PRINTS Disease resistance protein signature 486 502 - -
Trre8g04957 1197 FunFam Disease resistance protein (TIR-NBS-LRR class) 207 289 - -
Trre8g04957 1197 Pfam NB-ARC domain 83 129 IPR002182 GO:0043531
Trre8g04957 1197 Pfam NB-ARC domain 174 271 IPR002182 GO:0043531
Trre8g04957 1197 Gene3D - 205 289 IPR042197 -
Trre8g04957 1197 SUPERFAMILY "Winged helix" DNA-binding domain 276 380 IPR036390 -
Trre8g04957 1197 SUPERFAMILY L domain-like 635 937 - -
Trre8g04957 1197 Gene3D Ribonuclease Inhibitor 603 770 IPR032675 -
Trre8g04957 1197 Pfam C-JID domain 985 1138 IPR045344 -
Trre8g04957 1197 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 597 818 IPR044974 GO:0006952
Trre8g04957 1197 Gene3D Ribonuclease Inhibitor 771 975 IPR032675 -
Trre8g04957 1197 Gene3D - 2 69 IPR035897 -
Trre8g04957 1197 Gene3D Ribonuclease Inhibitor 388 602 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04957 Trre-Chr8 52503942 52509567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04957 822 953 WRKY Transcription Factor Family AT4G12020 31.655 1.85e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04957 - - tpra:123916959 1638.62